Transcript: Zm00001eb042160_T002

Description

Zm00001e004200

Location

Chromosome 1: 222,105,017-222,107,638 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 1048 variant alleles and maps to 15 oligo probes.

Gene

This transcript is a product of gene Zm00001eb042160 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	Zm00001eb042160_T002	2283	579aa	Zm00001eb042160_P002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D6KPP8 A0A317Y9K5 B6SW64	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	Zm00001eb042160_T001	2583	472aa	Zm00001eb042160_P001	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
-	Zm00001eb042160_T003	1843	472aa	Zm00001eb042160_P003	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,283 bps, Translation length: 579 residues

Version

Zm00001eb042160_T002

Type

Protein coding

Annotation Method

Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

Transcript: Zm00001eb042160_T002

Summary

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Transcript: Zm00001eb042160_T002

Summary

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