Setaria viridis (Setaria_viridis_v2.0)

About Setaria viridis

The green foxtail, Setaria viridis (2n=2x=18, AA), is a wild ancestor of cultivated foxtail millet. It is a model system for warm-season (C4) grasses within the Panicoideae, a group of ca. 3300 species that includes not only essential grain, forage and biofuel crops, but also ecological dominants of tropical and warm temperate environments. Green foxtail plants are generally small, with a short life cycle (seed to seed in 8-10 weeks) and self-compatible, with a single inflorescence that often produces hundreds of seeds. Transformation is efficient, and is amenable to CRisPR-Cas9 mediated mutagenesis. This genome is the result of the collaboration led by the Donald Danforth Plant Science Center, the Joint Genome Institute, HudsonAlpha Institute for Biotechnology and RIKEN.

Taxonomy ID 4556

Data source Joint Genome Institute

More information and statistics

Genome assembly: Setaria_viridis_v2.0

More information and statistics

Download DNA sequence (FASTA)

Display your data in Ensembl Plants

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Phytozome

About this species