About Solanum lycopersicum
Solanum lycopersicum (tomato) is a member of the nightshade family, Solanaceae, which includes a variety of agricultural crop plants (e.g. potato, pepper, eggplant, and tobacco). The tomato originated in the Andean region of South America, was grown by Aztecs in Mesoamerica, and spread to Europe by early Spanish explorers. Today, hundreds of varieties are grown throughout the world, with the largest producers being China and the United States. In addition to its value as a food, the tomato has served as an important model system for the study of fruit ripening, plant-pathogen interactions, and molecular genetic mapping. The nuclear genome contains 12 chromosomes and is ~950 Mbp in size.
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
Download alignments (EMF)
|Solanum lycopersicum : Arabidopsis thaliana||LASTZ_NET|
|Solanum lycopersicum : Vitis vinifera||LASTZ_NET|
|Solanum lycopersicum : Solanum tuberosum||LASTZ_NET|
|Solanum lycopersicum : Oryza sativa Japonica (Rice)||LASTZ_NET|
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor: