About Leersia perrieri
Leersia perrieri comes from Madagascar. It was the nearest outgroup of the genus Oryza included in the OMAP project. It has 12 chromosomes with a nuclear genome size of 323Mb (flow cytometry). The sequencing and assembly of this genome was carried out as part of the Oryza Genome Evolution project funded by NSF Award #1026200.
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
Download alignments (EMF)
|Leersia perrieri : Oryza barthii||LASTZ_NET | stats|
|Leersia perrieri : Oryza glaberrima||LASTZ_NET | stats|
|Leersia perrieri : Oryza glumaepatula||LASTZ_NET | stats|
|Leersia perrieri : Oryza longistaminata||LASTZ_NET | stats|
|Leersia perrieri : Oryza meridionalis||LASTZ_NET | stats|
|Leersia perrieri : Oryza nivara||LASTZ_NET | stats|
|Leersia perrieri : Oryza rufipogon||LASTZ_NET | stats|
|Leersia perrieri : Oryza sativa Indica||LASTZ_NET | stats|
|Leersia perrieri : Oryza sativa Japonica||LASTZ_NET | stats|
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene and Ensembl Plants project include:
- Gene phylogenetic trees with other other Gramene species, see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features by programs such as RepeatMasker with MIPS and AGI repeat libraries, and Dust, TRF.