Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
Search »
Populus trichocarpa (Pop_tri_v3) ▼

Favourite species

All species

Search

About Populus trichocarpa

Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mb, 2n=38) has lead to its use as a model organism for tree species.

Taxonomy ID 3694

Data source Joint Genome Institute

More information and statistics

View karyotypeExample region

Genome assembly: Pop_tri_v3

More information and statistics

Download DNA sequence (FASTA)

Convert your data to Pop_tri_v3 coordinates

Display your data in Ensembl Plants

Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Regulation

What can I find? Microarray annotations.

More about the Ensembl Plants microarray annotation strategy