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About Populus trichocarpa
Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mb, n=18) has lead to its use as a model organism for tree species.
Taxonomy ID 3694
Data source Joint Genome Institute
Convert your data to Pop_tri_v3 coordinates
Display your data in Ensembl Plants
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
Genomic alignments [4]
[Show»«Hide
| Populus trichocarpa : Arabidopsis thaliana | LASTZ_NET | stats |
| Populus trichocarpa : Medicago truncatula | LASTZ_NET | stats |
| Populus trichocarpa : Oryza sativa Japonica Group | LASTZ_NET | stats |
| Populus trichocarpa : Vitis vinifera | LASTZ_NET | stats |
Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Regulation
What can I find? Microarray annotations.
More about the Ensembl Plants microarray annotation strategy
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