Populus trichocarpa (Pop_tri_v3)

About Populus trichocarpa

Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mb, 2n=38) has lead to its use as a model organism for tree species.

Taxonomy ID 3694

Data source Joint Genome Institute

More information and statistics

Genome assembly: Pop_tri_v3

More information and statistics

Download DNA sequence (FASTA)

Convert your data to Pop_tri_v3 coordinates

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Regulation

What can I find? Microarray annotations.

More about the Ensembl Plants microarray annotation strategy

About this species