Populus trichocarpa (Pop_tri_v3)

About Populus trichocarpa

Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mb, 2n=38) has lead to its use as a model organism for tree species.

Taxonomy ID 3694

Data source Joint Genome Institute

More information and statistics

Genome assembly: Pop_tri_v3

More information and statistics

Download DNA sequence (FASTA)

Convert your data to Pop_tri_v3 coordinates

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor


What can I find? Microarray annotations.

More about the Ensembl Plants microarray annotation strategy

About this species