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Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
Vigna angularis (Vigna angularis strain Jingnong 6)
----
-
Vigna radiata (Vigna radiata var. radiata strain VC1973A)
-------
Vigna unguiculata (Vigna unguiculata strain IT97K-499-35)
----
-
Glycine max (Glycine max strain Williams 82)
----
----
Glycine soja (Wild soybean) (Glycine soja)
-----------
Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan)
-----------
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
-----------
Sphenostylis stenocarpa (Sphenostylis stenocarpa)
-------
Lathyrus sativus (Lathyrus sativus)
----
-----
-
Pisum sativum (Pisum sativum cultivar Cameor)
----------
Vicia faba (Vicia faba)
-----------
-
Medicago truncatula (Medicago truncatula)
----------
Trifolium pratense (Trifolium pratense strain Milvus B)
---------------
Arachis hypogaea (Arachis hypogaea)
---------------
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
-------
Prunus avium (Prunus avium strain Satonishiki)
-------
-
Prunus dulcis (Prunus dulcis strain Texas)
-------
----
Prunus persica (Prunus persica strain Lovell)
--------------
Malus domestica Golden (Malus domestica strain Golden Delicious)
----
-
---------
Cannabis sativa female (Cannabis sativa)
------------------
Ficus carica (Ficus carica cultivar Dottato)
------------------
Rosa chinensis (Rosa chinensis)
----------
Corylus avellana (Corylus avellana cultivar Tombul)
---------------
-
Juglans regia (Juglans regia cultivar Chandler)
----------
Quercus lobata (Quercus lobata)
----------
Quercus suber (Quercus suber reference strain)
----------
Citrullus lanatus (Citrullus lanatus strain 97103)
---------------
-
Cucumis melo (Cucumis melo)
----------
Cucumis sativus (Cucumis sativus strain 9930)
---------------
-
Manihot esculenta (Manihot esculenta)
-------
Populus trichocarpa (Populus trichocarpa)
-------
Brassica juncea (Brassica juncea cultivar Sichuan Huangzi)
-------
-
Brassica napus (Brassica napus strain Darmor-bzh)
----------
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
----
-------
Brassica rapa R-o-18 (Brassica rapa subsp. trilocularis cultivar R-o-18)
-------------
Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)
----------
-
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
----------
----
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
----------------
Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1))
-------------
-
Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2))
----------------
Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3))
-----------------
Arabis alpina (Arabis alpina)
-----------------
Eutrema salsugineum (Eutrema salsugineum)
-----------
----
Corchorus capsularis (Corchorus capsularis strain CVL-1)
--------------
-
Gossypium raimondii (Gossypium raimondii)
-------------
Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar)
--------------
-
Corymbia citriodora (Corymbia citriodora subsp. variegata genotype CCV2-018)
-------------
Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1)
------------------
Citrus clementina (Citrus x clementina strain Clemenules)
------------------
Pistacia vera (Pistacia vera strain Batoury)
------------------------
--------------------
Vitis vinifera (Vitis vinifera)
----------
-
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
----------
----
Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44)
-----------------
Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)
-----------------
Nicotiana attenuata (Nicotiana attenuata strain UT)
-------------
Cynara cardunculus (Cynara cardunculus var. scolymus)
--------------
-
Helianthus annuus (Helianthus annuus cultivar XRQ/B)
-------------
Lactuca sativa (Lactuca sativa cultivar Salinas)
---------------
-----
-
Fraxinus excelsior (Fraxinus excelsior reference strain)
-------------
Olea europaea (Olea europaea subsp. europaea variety Farga)
------------------
Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)
------------------
Coffea canephora (Coffea canephora strain DH200-94)
------------------
Daucus carota (Daucus carota subsp. sativus strain DH1)
------------------
Ipomoea triloba (Ipomoea triloba strain NCNSP0323)
------------------
Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13)
-----------------------
-
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
----------
Chenopodium quinoa (Chenopodium quinoa strain PI614886)
---------------------------
Kalanchoe fedtschenkoi (Kalanchoe fedtschenkoi)
-------
Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))
-------
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
-------
-
Triticum spelta (component A) (Triticum spelta cultivar Spelta (component A))
-------
----
Triticum timopheevii (component A) (Triticum timopheevii (component A))
-------------
Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))
--------------
Triticum urartu (Triticum urartu strain G1812 (PI428198))
----------
Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))
----------
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
-------
-----
-
Triticum spelta (component B) (Triticum spelta cultivar Spelta (component B))
-------------
Triticum timopheevii (component B) (Triticum timopheevii (component B))
-------------
Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))
-------------
Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)
--------------
-
Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))
-------------
Triticum spelta (component D) (Triticum spelta cultivar Spelta (component D))
-------
--------
-
Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))
-------------
Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))
------------------
-
Avena sativa OT3098 (Avena sativa strain OT3098)
----
------------
-------
Avena sativa Sang (Avena sativa strain sang)
----------------------------
Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex)
----------------------------
Lolium perenne (Lolium perenne reference strain)
----------------------------
Secale cereale (Secale cereale)
-----------------------------
Brachypodium distachyon (Brachypodium distachyon strain Bd21)
-------------
-
Oryza nivara (Oryza nivara cultivar IRGC:100897)
-------------
----
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
----------
----
----
-
Oryza rufipogon (Oryza rufipogon cultivar W1943)
----------------------
Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar)
-----------------------
-
Oryza barthii (Oryza barthii cultivar IRGC:105608)
----------------
----
Oryza glaberrima (Oryza glaberrima cultivar CG14)
-------------------------------
Oryza glumipatula (Oryza glumipatula)
----------------
----------------
Oryza longistaminata (Oryza longistaminata)
----------------
-------------------
Oryza meridionalis (Oryza meridionalis cultivar OR44 (W2112))
-------------
-----------------------
Oryza punctata (Oryza punctata cultivar IRGC:105690)
------------------------------------
Oryza brachyantha (Oryza brachyantha cultivar IRGC:101232)
-------------------------------------
Leersia perrieri (Leersia perrieri cultivar IRGC:105164)
-------------
Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A))
----
-------
----
-
Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B))
-------------------
----
Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C))
-------------------------
Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D))
----------------------
-
Sorghum bicolor (Sorghum bicolor strain BTx623)
----------------------
Zea mays (Zea mays strain B73)
------------------------------------
---------
Digitaria exilis (Digitaria exilis strain digitaria_exilis)
---------------------------
Echinochloa crus-galli (Echinochloa crus-galli reference strain)
-------------
---------------
Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype)
------------------------------
Setaria italica (Setaria italica strain Yugu1)
------------------------------
Setaria viridis (Setaria viridis strain A10)
----
--------------------------------------------
-
Eragrostis curvula (Eragrostis curvula strain Tanganyika)
-------------
----------
Eragrostis tef (Eragrostis tef cultivar Dabbi)
------------------------------------------------------
Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang))
-------------------------------------------------------
Ananas comosus (Ananas comosus strain F153)
-------------------------------------------------------
Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata)
--------------------------------------------------------
Asparagus officinalis (Asparagus officinalis strain DH00/086)
----
------------------------------------------------------
Amborella trichopoda (Amborella trichopoda)
------------------------------------------------------------
Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983)
------------------------------------------------------------
Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1))
-------------------------------------------------------------
Selaginella moellendorffii (Selaginella moellendorffii)
--------------------------------------------------------------
Marchantia polymorpha (Marchantia polymorpha)
--------------------------------------------------------------
Physcomitrium patens (Physcomitrium patens strain Gransden 2004)
----
------------------------------------------------------------
Chara braunii (Chara braunii strain S276)
----------
-
C.savignyi (Ciona savignyi)
----------
----
Human (Homo sapiens)
-------------------------------------------------------
----
-
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)
-
----------
Drosophila melanogaster (Fruit fly) - GCA_000001215.4 [FlyBase annotation] (Drosophila melanogaster)
------------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)
---------------------------------------------------------------
-
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)
-------
Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
-------
-
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
------------------------------------------------------------
----
Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
--------
Chondrus crispus (Chondrus crispus strain Stackhouse)