Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
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Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
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Chondrus crispus (Chondrus crispus strain Stackhouse)
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Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)
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Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
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Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))
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Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))
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Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
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Triticum urartu (Triticum urartu strain G1812 (PI428198))
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Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))
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Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))
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Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)
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Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))
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Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
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Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))
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Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))
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Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex)
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Secale cereale (Secale cereale)
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Brachypodium distachyon (Brachypodium distachyon strain Bd21)
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Oryza rufipogon (Oryza rufipogon strain W1943)
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Oryza sativa Japonica Group (Oryza sativa Japonica Group strain Nipponbare)
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Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
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Oryza nivara (Oryza nivara strain IRGC:100897)
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Oryza barthii (Oryza barthii strain IRGC:105608)
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Oryza glaberrima (Oryza glaberrima strain CG14)
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Oryza glumipatula (Oryza glumipatula)
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Oryza longistaminata (Oryza longistaminata)
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Oryza meridionalis (Oryza meridionalis strain OR44 (W2112))
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Oryza punctata (Oryza punctata strain IRGC:105690)
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Oryza brachyantha (Oryza brachyantha strain IRGC:101232)
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Leersia perrieri (Leersia perrieri strain IRGC:105164)
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Eragrostis tef (Eragrostis tef strain Tsedey)
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Eragrostis curvula (Eragrostis curvula strain Tanganyika)
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Zea mays (Zea mays strain B73)
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Sorghum bicolor (Sorghum bicolor strain BTx623)
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Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C))
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Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D))
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Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B))
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Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A))
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Setaria italica (Setaria italica strain Yugu1)
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Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype)
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Echinochloa crus-galli (Echinochloa crus-galli reference strain)
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Setaria viridis (Setaria viridis strain A10)
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Digitaria exilis (Digitaria exilis strain digitaria_exilis)
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Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang))
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Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata)
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Ananas comosus (Ananas comosus strain F153)
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Asparagus officinalis (Asparagus officinalis strain DH00/086)
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Chenopodium quinoa (Chenopodium quinoa strain PI614886)
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Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
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Populus trichocarpa (Populus trichocarpa strain Nisqually 1)
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Manihot esculenta (Manihot esculenta strain AM560-2)
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Cucumis melo (Cucumis melo)
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Cucumis sativus (Cucumis sativus strain 9930)
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Citrullus lanatus (Citrullus lanatus strain 97103)
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Quercus lobata (Quercus lobata)
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Juglans regia (Juglans regia cultivar Chandler)
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Corylus avellana (Corylus avellana cultivar Tombul)
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Prunus dulcis (Prunus dulcis strain Texas)
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Prunus avium (Prunus avium strain Satonishiki)
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Prunus persica (Prunus persica strain Lovell)
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Malus domestica Golden (Malus domestica strain Golden Delicious)
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Rosa chinensis (Rosa chinensis)
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Cannabis sativa female (Cannabis sativa)
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Ficus carica (Ficus carica cultivar Dottato)
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Trifolium pratense (Trifolium pratense strain Milvus B)
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Medicago truncatula (Medicago truncatula strain A17)
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Vigna unguiculata (Vigna unguiculata strain IT97K-499-35)
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Vigna radiata (Vigna radiata var. radiata strain VC1973A)
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Vigna angularis (Vigna angularis strain Jingnong 6)
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Glycine max (Glycine max strain Williams 82)
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Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
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Pisum sativum (Pisum sativum cultivar Cameor)
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Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
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Corymbia citriodora (Corymbia citriodora subsp. variegata genotype CCV2-018)
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Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1)
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Corchorus capsularis (Corchorus capsularis strain CVL-1)
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Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar)
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Gossypium raimondii (Gossypium raimondii)
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Brassica rapa R-o-18 (Brassica rapa subsp. trilocularis cultivar R-o-18)
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Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
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Brassica napus (Brassica napus strain Darmor-bzh)
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Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3))
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Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2))
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Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1))
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Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)
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Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
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Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
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Arabis alpina (Arabis alpina)
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Eutrema salsugineum (Eutrema salsugineum)
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Pistacia vera (Pistacia vera strain Batoury)
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Citrus clementina (Citrus clementina strain Clemenules)
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Vitis vinifera (Vitis vinifera strain PN40024)
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Helianthus annuus (Helianthus annuus cultivar XRQ/B)
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Cynara cardunculus (Cynara cardunculus var. scolymus)
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Lactuca sativa (Lactuca sativa cultivar Salinas)
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Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44)
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Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
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Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)
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Nicotiana attenuata (Nicotiana attenuata strain UT)
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Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)
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Daucus carota (Daucus carota subsp. sativus strain DH1)
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Coffea canephora (Coffea canephora strain DH200-94)
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Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13)
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Ipomoea triloba (Ipomoea triloba strain NCNSP0323)
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Olea europaea (Olea europaea subsp. europaea variety Farga)
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Kalanchoe fedtschenkoi (Kalanchoe fedtschenkoi)
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Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983)
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Amborella trichopoda (Amborella trichopoda)
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Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1))
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Selaginella moellendorffii (Selaginella moellendorffii)
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Marchantia polymorpha (Marchantia polymorpha strain Tak-1)
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Physcomitrium patens (Physcomitrium patens strain Gransden 2004)
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Chara braunii (Chara braunii strain S276)
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C.savignyi (Ciona savignyi)
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Human (Homo sapiens)
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Caenorhabditis elegans (PRJNA13758) (Caenorhabditis elegans strain N2)
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Drosophila melanogaster (Drosophila melanogaster)
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Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)