Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
-
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
------------------------------------------------------------
----
Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
-----------
Chondrus crispus (Chondrus crispus strain Stackhouse)
---------------------------------------------------------------
-
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)
----------
Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)
--------------
-
Oryza barthii (Oryza barthii strain IRGC:105608)
----------
----
Oryza glaberrima (Oryza glaberrima strain CG14)
----------------
-
Oryza nivara (Oryza nivara strain IRGC:100897)
-------------
----
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
----------
----
-
Oryza rufipogon (Oryza rufipogon strain W1943)
----------------
Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar)
----------
----------------
Oryza glumipatula (Oryza glumipatula)
----------------------------
Oryza meridionalis (Oryza meridionalis strain OR44 (W2112))
----------
-------------------
Oryza longistaminata (Oryza longistaminata)
----------
-----------------------
Oryza punctata (Oryza punctata strain IRGC:105690)
------------------------------------
Oryza brachyantha (Oryza brachyantha strain IRGC:101232)
-------------------------------------
Leersia perrieri (Leersia perrieri strain IRGC:105164)
---------------------
-
Avena sativa OT3098 (Avena sativa strain OT3098)
----------------
Avena sativa Sang (Avena sativa strain sang)
----------------
Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))
----------------
-
Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))
----------
-------
----
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
--------------------------
Triticum urartu (Triticum urartu strain G1812 (PI428198))
-----------------------
-
Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))
----------------
-
----
Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))
--------------------------
-
Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))
-------------------------
Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)
-------------------------
Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))
---------------------
-----------
-
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
-------------------
Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))
----------------------------
Secale cereale (Secale cereale)
----------------------------
Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex)
-
-------------------------
Lolium perenne (Lolium perenne reference strain)
-----------------------------
Brachypodium distachyon (Brachypodium distachyon strain Bd21)
----------
-----------------------------
-
Eragrostis tef (Eragrostis tef cultivar Dabbi)
----------------
Eragrostis curvula (Eragrostis curvula strain Tanganyika)
----------------
-
Sorghum bicolor (Sorghum bicolor strain BTx623)
----------------
----
Zea mays (Zea mays strain B73)
----------------------
Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B))
-------------------
-
Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C))
-------------------
Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A))
----------
------------------------
----
Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D))
---------------------------
Setaria viridis (Setaria viridis strain A10)
---------------------------
Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype)
---------------------------
Echinochloa crus-galli (Echinochloa crus-galli reference strain)
----------
------------------
Digitaria exilis (Digitaria exilis strain digitaria_exilis)
------------------------------
Setaria italica (Setaria italica strain Yugu1)
---------------------------------------------------
Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang))
----------------------------------------------------
Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata)
----------------------------------------------------
Ananas comosus (Ananas comosus strain F153)
-----------------------------------------------------
Asparagus officinalis (Asparagus officinalis strain DH00/086)
-----------------------------
-
Chenopodium quinoa (Chenopodium quinoa strain PI614886)
----------------
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
------------------------
-
Manihot esculenta (Manihot esculenta strain AM560-2)
-------------------
Populus trichocarpa (Populus trichocarpa)
-------------------
Cucumis melo (Cucumis melo)
------------------------
-
Cucumis sativus (Cucumis sativus strain 9930)
-------------------
Citrullus lanatus (Citrullus lanatus strain 97103)
-------------------
Quercus suber (Quercus suber reference strain)
------------------------
-
Juglans regia (Juglans regia cultivar Chandler)
-------------------
Quercus lobata (Quercus lobata)
-------------------
Corylus avellana (Corylus avellana cultivar Tombul)
-----------------------
-
Trifolium pratense (Trifolium pratense strain Milvus B)
----
----------------
Medicago truncatula (Medicago truncatula strain A17)
-------------
-------
Vigna radiata (Vigna radiata var. radiata strain VC1973A)
----------------------
-
Vigna angularis (Vigna angularis strain Jingnong 6)
----------------
-------
Vigna unguiculata (Vigna unguiculata strain IT97K-499-35)
-------------------
-----
Glycine max (Glycine max strain Williams 82)
--------------------------
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
--------------------------
Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan)
---------------------------
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
---------------------------
Pisum sativum (Pisum sativum cultivar Cameor)
-------------------
Prunus persica (Prunus persica strain Lovell)
-------------------
-
Prunus avium (Prunus avium strain Satonishiki)
-------------------
----
Prunus dulcis (Prunus dulcis strain Texas)
--------------------------
Malus domestica Golden (Malus domestica strain Golden Delicious)
----------------
---------
Cannabis sativa female (Cannabis sativa)
------------------------
Ficus carica (Ficus carica cultivar Dottato)
------------------------
Rosa chinensis (Rosa chinensis)
--------------------
-
Corymbia citriodora (Corymbia citriodora subsp. variegata genotype CCV2-018)
-------
-------------
Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1)
-------------
-------
Corchorus capsularis (Corchorus capsularis strain CVL-1)
------------------------------
-----------
-
Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar)
----------------------
Gossypium raimondii (Gossypium raimondii)
----------------------
Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2))
----------------------
-
Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3))
-------------------------
Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1))
-------------------------
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
--------------------
----
-
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
-------------------------
Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)
-------------------
----
Brassica napus (Brassica napus strain Darmor-bzh)
----------------------
-
Brassica rapa R-o-18 (Brassica rapa subsp. trilocularis cultivar R-o-18)
-------------------------
Brassica juncea (Brassica juncea cultivar Sichuan Huangzi)
-------------------------
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
--------------------------
Eutrema salsugineum (Eutrema salsugineum)
--------------------------
Arabis alpina (Arabis alpina)
---------------------------
Pistacia vera (Pistacia vera strain Batoury)
---------------------------
Citrus clementina (Citrus clementina strain Clemenules)
-------
--------------------------
Vitis vinifera (Vitis vinifera strain PN40024)
-----------------------
-
Olea europaea (Olea europaea subsp. europaea variety Farga)
----------------------
Fraxinus excelsior (Fraxinus excelsior reference strain)
----------------------
Lactuca sativa (Lactuca sativa cultivar Salinas)
-----------------------
-
Cynara cardunculus (Cynara cardunculus var. scolymus)
----------------------
Helianthus annuus (Helianthus annuus cultivar XRQ/B)
----------------------
-
Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44)
------------------------
-
----
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
--------------------------
Nicotiana attenuata (Nicotiana attenuata strain UT)
--------------------------
Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)
-------
---------------------
Daucus carota (Daucus carota subsp. sativus strain DH1)
------------------------------
Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)
------------------------------
Ipomoea triloba (Ipomoea triloba strain NCNSP0323)
------------------------------
Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13)
------------------------------
Coffea canephora (Coffea canephora strain DH200-94)
---------------------------------------
Kalanchoe fedtschenkoi (Kalanchoe fedtschenkoi)
----
------------------------------------------------------
Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983)
------------------------------------------------------------
Amborella trichopoda (Amborella trichopoda)
------------------------------------------------------------
Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1))
-------------------------------------------------------------
Selaginella moellendorffii (Selaginella moellendorffii)
--------------------------------------------------------------
Marchantia polymorpha (Marchantia polymorpha strain Tak-1)
--------------------------------------------------------------
Physcomitrium patens (Physcomitrium patens strain Gransden 2004)
---------------------------------------------------------------
Chara braunii (Chara braunii strain S276)
-------
-
C.savignyi (Ciona savignyi)
-------
----
Human (Homo sapiens)
----------------------------------------------------
----
-
Caenorhabditis elegans (PRJNA13758) (Caenorhabditis elegans strain N2)
-------
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)
------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)