Physcomitrium patens (Phypa_V3)

About Physcomitrium patens

The mosses (Bryophytes) are non-vascular plants that appeared very early in the fossil record, soon after the transition of plants to terrestrial environments. The Physcomitrium patens genome is therefore valuable in understanding early evolution and adaptation of land plants. Physcomitrium also serves as a model organism for studies of physiology and development. Unlike in higher plants, targeted gene knockouts can be made efficiently in the laboratory, thereby facilitating reverse-genetics approaches to studying gene function. The annotated genome hosted here thereby represents an important resource to the plant research community. Note this species was formerly know as Physcomitrella patens.

Taxonomy ID 3218

Data source Joint Genome Institute

More information and statistics

Genome assembly: Phypa_V3

More information and statistics

Download DNA sequence (FASTA)

Convert your data to Phypa_V3 coordinates

Display your data in Ensembl Plants

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)


This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor