Arabidopsis thaliana

Arabidopsis thaliana

Data Source TAIR | Taxonomy ID 3702

About Arabidopsis thaliana

Arabidopsis thaliana is a small flowering plant that is widely used as a model organism in plant biology. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Arabidopsis is not of major agronomic significance, but it offers important advantages for basic research in genetics and molecular biology. Arabidopsis thaliana has a genome size of ~135 Mbp, and a haploid chromosome number of 5.

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Download alignments (EMF)

Genomic alignments [26] [Show»«Hide
Arabidopsis thaliana : Amborella trichopodaTRANSLATED_BLAT_NET | stats
Arabidopsis thaliana : Arabidopsis lyrataBLASTZ_NET | stats
Arabidopsis thaliana : Brachypodium distachyonBLASTZ_NET | stats
Arabidopsis thaliana : Brassica oleraceaLASTZ_NET | stats
Arabidopsis thaliana : Brassica rapaLASTZ_NET | stats
Arabidopsis thaliana : Chlamydomonas reinhardtiiBLASTZ_NET | stats
Arabidopsis thaliana : Cyanidioschyzon merolaeLASTZ_NET | stats
Arabidopsis thaliana : Glycine maxBLASTZ_NET | stats
Arabidopsis thaliana : Medicago truncatula str. A17LASTZ_NET | stats
Arabidopsis thaliana : Musa acuminataLASTZ_NET | stats
Arabidopsis thaliana : Oryza brachyanthaLASTZ_NET | stats
Arabidopsis thaliana : Oryza glaberrimaBLASTZ_NET | stats
Arabidopsis thaliana : Oryza longistaminataLASTZ_NET | stats
Arabidopsis thaliana : Oryza meridionalisLASTZ_NET | stats
Arabidopsis thaliana : Oryza sativa IndicaBLASTZ_NET | stats
Arabidopsis thaliana : Oryza sativa JaponicaLASTZ_NET | stats
Arabidopsis thaliana : Physcomitrella patensBLASTZ_NET | stats
Arabidopsis thaliana : Populus trichocarpaLASTZ_NET | stats
Arabidopsis thaliana : Prunus persicaLASTZ_NET | stats
Arabidopsis thaliana : Selaginella moellendorffiiBLASTZ_NET | stats
Arabidopsis thaliana : Setaria italicaLASTZ_NET | stats
Arabidopsis thaliana : Solanum lycopersicum str. Heinz 1706LASTZ_NET | stats
Arabidopsis thaliana : Sorghum bicolorBLASTZ_NET | stats
Arabidopsis thaliana : Theobroma cacaoLASTZ_NET | stats
Arabidopsis thaliana : Vitis viniferaBLASTZ_NET | stats
Arabidopsis thaliana : Zea maysLASTZ_NET | stats
]

Variation

What can I find? Short sequence variants and longer structural variants.

More about variation in Arabidopsis thaliana

More about variation in Ensembl Plants

Download all variants - GVF - VCF - VEP

Variant Effect Predictor