Summary
- Splice variants
- Transcript comparison
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ID History
- Gene history

Gene: Zm00001eb376070

Description

Zm00001e036434

Location

Chromosome 9: 19,151,614-19,154,301 reverse strand.

About this gene

This gene has 2 transcripts (splice variants), 554 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	Zm00001eb376070_T002	1401	281aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6T525	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	Zm00001eb376070_T001	1346	198aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A804R211	-	-

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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SIFTAll
SIFT

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1
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ConsequencesAll
Consequences

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PTV
PTV & Missense
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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(21)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(3)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(10)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(30)

5 prime UTR variant
(26)

3 prime UTR variant
(0)

non coding transcript exon variant
(89)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(480)

upstream gene variant
(496)

downstream gene variant
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LocationAll
Location

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9:19146614 - 9:19159301
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ClassAll
Class

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Only Somatic
Not Somatic
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(1146)
SNP
(6)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
Source

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(1112)
HapMap2
(40)
Panzea_2.7GBS
(0)
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EvidenceAll
Evidence

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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(1152)
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Clinical SignificanceAll
Clinical Significance

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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(1152)
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AA coordAll
AA coord

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TranscriptAll
Transcript

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(576)
Zm00001eb376070_T001
(576)
Zm00001eb376070_T002
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- Location
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