Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: Vigun02g055700.v1.2

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Location

Primary_assembly 2: 19,910,435-19,915,778 reverse strand.

About this gene

This gene has 6 transcripts (splice variants), 167 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	Vigun02g055700.1.v1.2	3651	988aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	Vigun02g055700.2.v1.2	4237	687aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
-	Vigun02g055700.5.v1.2	4076	687aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
-	Vigun02g055700.6.v1.2	3773	687aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
-	Vigun02g055700.3.v1.2	3604	909aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
-	Vigun02g055700.4.v1.2	3490	687aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

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Paralogues

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Download paralogues

Type	Ancestral taxonomy	Ensembl identifier & gene name	Compare	Location	Percentage of the paralogous sequence matching the query sequenceTarget %id	Percentage of the query sequence matching the sequence of the paralogueQuery %id
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun06g143400.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	6:26,898,562-26,903,499:1	29.87 %	31.38 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun03g198800.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	3:28,537,394-28,540,930:-1	31.24 %	30.67 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun09g063300.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	9:6,634,206-6,647,708:1	39.10 %	35.93 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun03g350900.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	3:55,202,473-55,215,146:1	39.02 %	35.63 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun04g040700.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	4:3,512,566-3,519,416:1	36.63 %	39.37 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun07g233900.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	7:35,574,239-35,582,483:1	37.58 %	37.04 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun07g003200.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	7:253,782-261,378:1	37.35 %	36.74 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun11g043400.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	11:6,379,475-6,395,631:1	31.28 %	28.24 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun08g178900.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	8:34,878,838-34,886,097:1	30.38 %	27.73 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun06g025400.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	6:11,767,097-11,775,775:-1	31.15 %	28.85 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun11g132800.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	11:34,148,189-34,154,497:-1	36.78 %	36.74 %
Ancient paralogues	Last common ancestor with Red algae (Rhodophyta)Eukaryotes (Eukaryota)	Vigun11g133000.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	11:34,188,494-34,194,747:-1	36.58 %	36.54 %
Genes (homologues) that have evolved by duplication.Paralogues	Vigna unguiculata	Vigun02g055800.v1.2 No description	Region Comparison Alignment (protein) Alignment (cDNA)	2:19,950,732-19,954,473:-1	97.80 %	89.98 %

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