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Gene: TraesCSU02G033000

Location

Chromosome Un: 29,818,752-29,819,446 forward strand.

About this gene

This gene has 1 transcript (splice variant), 8 orthologues and 6 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	TraesCSU02G033000.1	695	91aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6U3X1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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SIFTAll
SIFT

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ConsequencesAll
Consequences

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PTV
PTV & Missense
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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(4)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(0)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(1)

stop retained variant
(6)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(4)

5 prime UTR variant
(7)

3 prime UTR variant
(0)

non coding transcript exon variant
(0)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(0)

upstream gene variant
(5)

downstream gene variant
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LocationAll
Location

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Un:29813752 - Un:29824446
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ClassAll
Class

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Only Somatic
Not Somatic
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(27)
SNP
(0)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
Source

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(22)
EMS-induced mutation
(5)
Exome_Capture_Diversity
(0)
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EvidenceAll
Evidence

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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(27)
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Clinical SignificanceAll
Clinical Significance

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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(27)
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AA coordAll
AA coord

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TranscriptAll
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(27)
TraesCSU02G033000.1
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- Location
- Class
- Source
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- Clinical Significance
- AA coord
- Transcript

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT	Transcript

Cadenza0595.chrUn.29818834	Un:29818834	A/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0763.chrUn.29818837	Un:29818837	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza1813.chrUn.29818838	Un:29818838	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0132.chrUn.29818842	Un:29818842	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0113.chrUn.29818909	Un:29818909	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/E	21	0.69	TraesCSU02G033000.1
Cadenza0216.chrUn.29818913	Un:29818913	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	22	-	TraesCSU02G033000.1
Cadenza0225.chrUn.29818917	Un:29818917	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	24	0.12	TraesCSU02G033000.1
Cadenza0242.chrUn.29818928	Un:29818928	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	27	-	TraesCSU02G033000.1
Cadenza0174.chrUn.29818948	Un:29818948	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	C/Y	34	0	TraesCSU02G033000.1
Cadenza0158.chrUn.29818967	Un:29818967	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	40	-	TraesCSU02G033000.1
Cadenza1444.chrUn.29819018	Un:29819018	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	57	-	TraesCSU02G033000.1
Cadenza0260.chrUn.29819066	Un:29819066	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	73	-	TraesCSU02G033000.1
Cadenza0278.chrUn.29819081	Un:29819081	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	78	-	TraesCSU02G033000.1
Cadenza1471.chrUn.29819088	Un:29819088	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	L/F	81	0.12	TraesCSU02G033000.1
Cadenza0310.chrUn.29819123	Un:29819123	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where at least one base in the terminator codon is changed, but the terminator remainsstop retained variant	*	92	-	TraesCSU02G033000.1
Cadenza1316.chrUn.29819125	Un:29819125	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0236.chrUn.29819130	Un:29819130	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0661.chrUn.29819140	Un:29819140	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza1575.chrUn.29819152	Un:29819152	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza0158.chrUn.29819170	Un:29819170	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza1564.chrUn.29819175	Un:29819175	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
Cadenza1726.chrUn.29819233	Un:29819233	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCSU02G033000.1
chrUn_scaffold47825_1610896	Un:29820207	C/T	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCSU02G033000.1
chrUn_scaffold47825_1610910	Un:29820221	A/G	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCSU02G033000.1
chrUn_scaffold47825_1611101	Un:29820412	G/A	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCSU02G033000.1
chrUn_scaffold47825_1612370	Un:29821681	T/A	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCSU02G033000.1
chrUn_scaffold47825_1612381	Un:29821692	G/A	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCSU02G033000.1

Gene: TraesCSU02G033000

Variant table

Variant table

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Gene: TraesCSU02G033000

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