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Gene: TraesCS5A02G082500

Location

Chromosome 5A: 106,854,894-106,855,853 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 35 orthologues and 2 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	TraesCS5A02G082500.1	960	228aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6KEI7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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SIFTAll
SIFT

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Consequences

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PTV
PTV & Missense
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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(0)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(0)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(0)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(0)

5 prime UTR variant
(4)

3 prime UTR variant
(0)

non coding transcript exon variant
(0)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(0)

upstream gene variant
(46)

downstream gene variant
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LocationAll
Location

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5A:106849894 - 5A:106860853
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ClassAll
Class

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Not Somatic
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(50)
SNP
(0)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
Source

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(3)
EMS-induced mutation
(47)
Watkins_collection
(0)
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EvidenceAll
Evidence

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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(50)
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Clinical SignificanceAll
Clinical Significance

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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(50)
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AA coordAll
AA coord

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TranscriptAll
Transcript

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TraesCS5A02G082500.1
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Filter Other ColumnsAll
- Location
- Class
- Source
- Evidence
- Clinical Significance
- AA coord
- Transcript

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT	Transcript

chr5A_106849941	5A:106849941	A/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850016	5A:106850016	C/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850100	5A:106850100	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850372	5A:106850372	C/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850396	5A:106850396	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850690	5A:106850690	C/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850691	5A:106850691	G/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850833	5A:106850833	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850835	5A:106850835	G/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106850850	5A:106850850	T/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851106	5A:106851106	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851131	5A:106851131	T/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851222	5A:106851222	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851333	5A:106851333	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851496	5A:106851496	T/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851514	5A:106851514	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851536	5A:106851536	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851552	5A:106851552	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851663	5A:106851663	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851714	5A:106851714	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851773	5A:106851773	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851918	5A:106851918	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106851995	5A:106851995	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106852075	5A:106852075	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106852532	5A:106852532	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106852869	5A:106852869	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106852894	5A:106852894	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106852897	5A:106852897	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853004	5A:106853004	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853025	5A:106853025	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853224	5A:106853224	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853243	5A:106853243	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853268	5A:106853268	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853583	5A:106853583	C/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853616	5A:106853616	C/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853619	5A:106853619	C/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853721	5A:106853721	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106853766	5A:106853766	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854163	5A:106854163	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854433	5A:106854433	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854624	5A:106854624	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854642	5A:106854642	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854688	5A:106854688	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854738	5A:106854738	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854824	5A:106854824	A/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854828	5A:106854828	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS5A02G082500.1
chr5A_106854936	5A:106854936	A/C	SNP	Watkins_collection	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS5A02G082500.1
Cadenza0697.chr5A.106854949	5A:106854949	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS5A02G082500.1
Cadenza1210.chr5A.106854949	5A:106854949	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS5A02G082500.1
Kronos1071.chr5A.106854949	5A:106854949	G/A	SNP	EMS-induced mutation	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS5A02G082500.1

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Gene: TraesCS5A02G082500

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Gene: TraesCS5A02G082500

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