Gene: TraesCS2D02G250900

Location

Chromosome 2D: 299,550,254-299,552,592 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 46 orthologues and 19 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	TraesCS2D02G250900.1	1817	367aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5UH23	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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PTV
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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(44)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(1)

splice region variant
(0)

splice donor region variant
(1)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(40)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(12)

5 prime UTR variant
(15)

3 prime UTR variant
(0)

non coding transcript exon variant
(15)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(18)

upstream gene variant
(9)

downstream gene variant
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LocationAll
Location

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2D:299545254 - 2D:299557592
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ClassAll
Class

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(153)
SNP
(0)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
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(25)
CerealsDB
(41)
EMS-induced mutation
(5)
Exome_Capture_Diversity
(65)
Inter-homoeologous
(17)
Watkins_collection
(0)
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1000Genomes
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HapMap
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Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(153)
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Clinical Significance

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uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(153)
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TranscriptAll
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TraesCS2D02G250900.1
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- Clinical Significance
- AA coord
- Transcript

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT	Transcript

chr2D_299546170	2D:299546170	A/G	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299547048	2D:299547048	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299547051	2D:299547051	C/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299547228	2D:299547228	G/T	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299547229	2D:299547229	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299548817	2D:299548817	G/A	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299550088	2D:299550088	T/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_scaffold82181_4343761	2D:299550088	T/C	SNP	Exome_Capture_Diversity	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299550171	2D:299550171	G/C	SNP	Watkins_collection	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099283	2D:299550354	C/G	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099284	2D:299550374	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099285	2D:299550407	A/T	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099286	2D:299550410	C/T	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099287	2D:299550485	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
BA00521285	2D:299550485	G/A	SNP	CerealsDB	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099288	2D:299550540	T/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099289	2D:299550543	A/G	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099290	2D:299550567	G/T	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099291	2D:299550577	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099292	2D:299550582	G/C	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099293	2D:299550613	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099294	2D:299550622	G/T	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099295	2D:299550676	G/A	SNP	Inter-homoeologous	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17)splice polypyrimidine tract variant A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099296	2D:299550799	C/T	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099297	2D:299550848	C/T	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099298	2D:299550894	G/C	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099299	2D:299550898	G/A	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099300	2D:299550932	T/G	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099301	2D:299550935	A/T	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099302	2D:299551000	A/G	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099303	2D:299551006	T/C	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099304	2D:299551027	C/T	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099305	2D:299551071	C/T	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099306	2D:299551088	T/C	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099307	2D:299551116	T/C	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099308	2D:299551141	A/C	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099309	2D:299551165	A/G	SNP	Inter-homoeologous	-	-	A transcript variant occurring within an intronintron variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099310	2D:299551205	G/T	SNP	Inter-homoeologous	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
BA00126821	2D:299551228	G/A	SNP	CerealsDB	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	TraesCS2D02G250900.1
Cadenza0643.chr2D.299551235	2D:299551235	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	D/N	367	0.01	TraesCS2D02G250900.1
BA00361067	2D:299551248	G/A	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	362	-	TraesCS2D02G250900.1
Cadenza1170.chr2D.299551249	2D:299551249	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	T/I	362	0.09	TraesCS2D02G250900.1
BA00126561	2D:299551254	G/T	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	360	-	TraesCS2D02G250900.1
BA00522937	2D:299551282	T/C	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	D/G	351	0.08	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099311	2D:299551338	C/T	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	332	-	TraesCS2D02G250900.1
Cadenza1494.chr2D.299551338	2D:299551338	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	332	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099312	2D:299551350	A/G	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	328	-	TraesCS2D02G250900.1
BA00755591	2D:299551350	A/G	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	328	-	TraesCS2D02G250900.1
Cadenza0225.chr2D.299551356	2D:299551356	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	P	326	-	TraesCS2D02G250900.1
Cadenza0155.chr2D.299551365	2D:299551365	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	E	323	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099313	2D:299551376	C/A	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/S	320	0.56	TraesCS2D02G250900.1
Cadenza1315.chr2D.299551446	2D:299551446	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	296	-	TraesCS2D02G250900.1
BA00596968	2D:299551475	G/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/T	287	0	TraesCS2D02G250900.1
Cadenza0241.chr2D.299551475	2D:299551475	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/S	287	0.07	TraesCS2D02G250900.1
BA00082017	2D:299551476	G/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	F/L	286	0	TraesCS2D02G250900.1
Cadenza1711.chr2D.299551497	2D:299551497	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	C	279	-	TraesCS2D02G250900.1
BA00737101	2D:299551500	C/A	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	278	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099314	2D:299551504	T/C	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	D/G	277	0.08	TraesCS2D02G250900.1
BA00156229	2D:299551504	T/C	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	D/G	277	0.08	TraesCS2D02G250900.1
Cadenza1243.chr2D.299551514	2D:299551514	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	E/K	274	0.25	TraesCS2D02G250900.1
BA00055494	2D:299551516	G/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/Q	273	0.65	TraesCS2D02G250900.1
Cadenza0643.chr2D.299551540	2D:299551540	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/Q	265	0.1	TraesCS2D02G250900.1
Cadenza0273.chr2D.299551549	2D:299551549	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/H	262	0.01	TraesCS2D02G250900.1
Cadenza1054.chr2D.299551550	2D:299551550	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/C	262	0	TraesCS2D02G250900.1
Cadenza1646.chr2D.299551575	2D:299551575	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	H	253	-	TraesCS2D02G250900.1
BA00237414	2D:299551581	C/G	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	251	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099315	2D:299551581	C/G	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	251	-	TraesCS2D02G250900.1
Cadenza1816.chr2D.299551585	2D:299551585	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/V	250	0.02	TraesCS2D02G250900.1
Cadenza0183.chr2D.299551637	2D:299551637	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/S	233	0	TraesCS2D02G250900.1
Cadenza0584.chr2D.299551640	2D:299551640	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	L/F	232	0.02	TraesCS2D02G250900.1
Cadenza1757.chr2D.299551691	2D:299551691	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/S	215	0.28	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099316	2D:299551694	C/T	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	214	0.23	TraesCS2D02G250900.1
BA00042646	2D:299551694	C/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	214	0.23	TraesCS2D02G250900.1
Cadenza0627.chr2D.299551710	2D:299551710	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	208	-	TraesCS2D02G250900.1
Cadenza0974.chr2D.299551722	2D:299551722	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	H	204	-	TraesCS2D02G250900.1
Cadenza1409.chr2D.299551749	2D:299551749	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	195	-	TraesCS2D02G250900.1
BA00200397	2D:299551764	A/C	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	190	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099317	2D:299551764	A/C	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	190	-	TraesCS2D02G250900.1
Cadenza0562.chr2D.299551797	2D:299551797	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	179	-	TraesCS2D02G250900.1
Cadenza0423.chr2D.299551809	2D:299551809	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	F	175	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099318	2D:299551854	G/C	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	160	-	TraesCS2D02G250900.1
Cadenza0127.chr2D.299551872	2D:299551872	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	154	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099319	2D:299551902	A/G	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	144	-	TraesCS2D02G250900.1
Cadenza1510.chr2D.299551920	2D:299551920	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	138	-	TraesCS2D02G250900.1
Cadenza1574.chr2D.299551960	2D:299551960	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/L	125	0	TraesCS2D02G250900.1
Cadenza0593.chr2D.299551979	2D:299551979	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	V/I	119	1	TraesCS2D02G250900.1
Cadenza0217.chr2D.299551980	2D:299551980	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	N	118	-	TraesCS2D02G250900.1
BA00246132	2D:299551987	C/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/Q	116	0.14	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099320	2D:299551987	C/T	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/Q	116	0.14	TraesCS2D02G250900.1
chr2D_scaffold82181_4345665	2D:299551992	A/G	SNP	Exome_Capture_Diversity	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	A	114	-	TraesCS2D02G250900.1
Cadenza0515.chr2D.299552027	2D:299552027	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	103	0.03	TraesCS2D02G250900.1
Cadenza1429.chr2D.299552040	2D:299552040	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	98	-	TraesCS2D02G250900.1
Cadenza1512.chr2D.299552041	2D:299552041	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/F	98	0	TraesCS2D02G250900.1
Cadenza0584.chr2D.299552047	2D:299552047	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	T/I	96	0	TraesCS2D02G250900.1
BA00286606	2D:299552058	G/A	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	F	92	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099321	2D:299552076	T/C	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	86	-	TraesCS2D02G250900.1
BA00124378	2D:299552076	T/C	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	86	-	TraesCS2D02G250900.1
Cadenza1694.chr2D.299552078	2D:299552078	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	V/I	86	0.43	TraesCS2D02G250900.1
Cadenza0231.chr2D.299552084	2D:299552084	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	84	0.51	TraesCS2D02G250900.1
Cadenza0604.chr2D.299552086	2D:299552086	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/D	83	0.24	TraesCS2D02G250900.1
BA00177548	2D:299552093	T/C	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/G	81	0.5	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099322	2D:299552093	T/C	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/G	81	0.5	TraesCS2D02G250900.1
Cadenza1713.chr2D.299552114	2D:299552114	G/A	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/W	74	0	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099323	2D:299552116	G/T	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/Y	73	0.08	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099324	2D:299552118	C/T	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	72	-	TraesCS2D02G250900.1
BA00575433	2D:299552130	C/A	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	E/D	68	1	TraesCS2D02G250900.1
Cadenza1481.chr2D.299552144	2D:299552144	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	E/K	64	0.78	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099325	2D:299552157	A/T	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	G	59	-	TraesCS2D02G250900.1
Cadenza0233.chr2D.299552167	2D:299552167	C/T	SNP	EMS-induced mutation	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/N	56	0.54	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099326	2D:299552167	C/A	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/I	56	0.48	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099327	2D:299552179	C/G	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/A	52	0.76	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099328	2D:299552193	G/C	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	P	47	-	TraesCS2D02G250900.1
Cadenza1434.chr2D.299552228	2D:299552228	G/A	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	36	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099329	2D:299552231	G/C	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/A	35	0.35	TraesCS2D02G250900.1
Cadenza1804.chr2D.299552241	2D:299552241	C/T	SNP	EMS-induced mutation	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	P	31	-	TraesCS2D02G250900.1
BA00309986	2D:299552252	A/C	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/A	28	0.41	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099330	2D:299552252	A/C	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/A	28	0.41	TraesCS2D02G250900.1
BA00696574	2D:299552255	C/T	SNP	CerealsDB	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	27	0.08	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099331	2D:299552255	C/T	SNP	Inter-homoeologous	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/T	27	0.08	TraesCS2D02G250900.1
chr2D_scaffold82181_4345929	2D:299552256	G/T	SNP	Exome_Capture_Diversity	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	R	26	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099332	2D:299552328	A/C	SNP	Inter-homoeologous	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	2	-	TraesCS2D02G250900.1
BA00799180	2D:299552328	A/C	SNP	CerealsDB	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	2	-	TraesCS2D02G250900.1
chr2D_scaffold82181_4346001	2D:299552328	A/C	SNP	Exome_Capture_Diversity	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	2	-	TraesCS2D02G250900.1
Cadenza0132.chr2D.299552345	2D:299552345	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
BA00441038	2D:299552351	G/A	SNP	CerealsDB	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099333	2D:299552351	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
BA00182211	2D:299552360	G/T	SNP	CerealsDB	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
BA00494523	2D:299552364	C/G	SNP	CerealsDB	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099334	2D:299552364	C/G	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
Cadenza1807.chr2D.299552393	2D:299552393	C/T	SNP	EMS-induced mutation	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099335	2D:299552434	G/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
chr2D_scaffold82181_4346120	2D:299552447	G/A	SNP	Exome_Capture_Diversity	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099336	2D:299552465	T/C	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099337	2D:299552467	A/C	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099338	2D:299552548	C/A	SNP	Inter-homoeologous	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099339	2D:299552601	G/A	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099340	2D:299552625	C/T	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099341	2D:299552627	A/T	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099342	2D:299552646	G/A	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099343	2D:299552756	T/C	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099344	2D:299552767	A/C	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099345	2D:299552867	G/C	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099346	2D:299552884	A/T	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
EPlTAEV_COMPDB_01099347	2D:299552896	G/T	SNP	Inter-homoeologous	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299553966	2D:299553966	G/T	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299553990	2D:299553990	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299554093	2D:299554093	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299555098	2D:299555098	C/T	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299555193	2D:299555193	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299556934	2D:299556934	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299557388	2D:299557388	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299557442	2D:299557442	G/A	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1
chr2D_299557493	2D:299557493	C/T	SNP	Watkins_collection	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	TraesCS2D02G250900.1

Gene: TraesCS2D02G250900

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Gene: TraesCS2D02G250900

Variant table

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