Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Homoeologues
- Cultivars
  - Gene tree
  - Orthologues
  - Paralogues
  - Homoeologues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: TraesCS2D02G307000

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Description

Smg-4/UPF3 family protein [Source:Projected from Arabidopsis thaliana (AT1G33980) TAIR;Acc:AT1G33980]

Location

Chromosome 2D: 393,580,236-393,588,873 reverse strand.

About this gene

This gene has 10 transcripts (splice variants) and 214 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	TraesCS2D02G307000.1	2388	509aa	TraesCS2D02G307000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DDQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	TraesCS2D02G307000.8	2385	508aa	TraesCS2D02G307000.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DHP3	-
-	TraesCS2D02G307000.6	2364	501aa	TraesCS2D02G307000.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DE85	-
-	TraesCS2D02G307000.5	2361	500aa	TraesCS2D02G307000.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DDQ4	-
-	TraesCS2D02G307000.4	2361	500aa	TraesCS2D02G307000.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DF83	-
-	TraesCS2D02G307000.7	2358	499aa	TraesCS2D02G307000.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DEL5	-
-	TraesCS2D02G307000.2	1933	427aa	TraesCS2D02G307000.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DEL2	-
-	TraesCS2D02G307000.3	1894	414aa	TraesCS2D02G307000.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DHN9	-
-	TraesCS2D02G307000.9	1259	349aa	TraesCS2D02G307000.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DF88	-
-	TraesCS2D02G307000.10	1256	348aa	TraesCS2D02G307000.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6DE79	-

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Cultivars

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data