Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: TraesCS4D02G147700

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Description

SCC3 [Source:Projected from Arabidopsis thaliana (AT2G47980) UniProtKB/TrEMBL;Acc:A0A178VN21]

Location

Chromosome 4D: 139,203,225-139,211,399 forward strand.

About this gene

This gene has 8 transcripts (splice variants), 155 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	Flags
-	TraesCS4D02G147700.3	4011	1138aa	TraesCS4D02G147700.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JHY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	TraesCS4D02G147700.6	3960	1121aa	TraesCS4D02G147700.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JJJ2	-
-	TraesCS4D02G147700.4	3957	1120aa	TraesCS4D02G147700.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JGA7	-
-	TraesCS4D02G147700.5	3954	1119aa	TraesCS4D02G147700.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JJ33	-
-	TraesCS4D02G147700.7	3864	1089aa	TraesCS4D02G147700.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JH79	-
-	TraesCS4D02G147700.8	3846	1123aa	TraesCS4D02G147700.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JHZ5	-
-	TraesCS4D02G147700.1	2504	771aa	TraesCS4D02G147700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JJI7	-
-	TraesCS4D02G147700.2	2459	756aa	TraesCS4D02G147700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3B6JH75	-

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Cultivars

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data