Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
U4/U6.U5 tri-snRNP-associated protein 1 isoform 5
Chromosome 7: 9,164,669-9,173,681 reverse strand.
This transcript has 12 exons and is annotated with 24 domains and features.
This transcript is a product of gene TCM_032152 Show transcript tableHide transcript table
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1 GTTGGAATACTTGTATAAAGTTAACCGGTTGACATTCCTATTACTTACACTCCATTTGAT 60 ............................................................ ............................................................ 61 TGATACTTTTATTATTTATATTTTATGTCTTAAAAAAAATATTACGCAAATAATAAAAAG 120 ............................................................ ............................................................ 121 TAAATAACAAAAATATGAACCGAACAAATTGTATTTGCAAGTTTGTGTGGGCCTGGCTCA 180 ............................................................ ............................................................ 181 GAAGGAAACCAAGTTAAAACCCAAAAAGAGATTCCCCCAACCCCAAAAGGCCCAACCCAT 240 ............................................................ ............................................................ 241 CTACCAAACAAAGATCCAAATAAGACAACCCGGCCCACCAAAGCTTTTCCTCTGAAAACA 300 ............................................................ ............................................................ 301 GAGGCGGAATTTTGCTGGAAAAATCCCCTCTTATTCGTGTGCAAAACTAGTTTACTCTCT 360 ............................................................ ............................................................ 361 CAACTGGGTCATCTAAATTCCATCTCCGGCCGCCGGATCCCCTCCTTCGCCGCCGCTACC 420 ............................................................ ............................................................ 421 GCTGTCTTCTCCGCATTCCTCCGAATTCCCAGTAACACCCATCTGCCTTATTTGTTGTTT 480 ............................................................ ............................................................ 481 TCTTTTTCCCTCTTTCTTTCAATCTTTCTTTTTTATGTTTTCTCTTTGTTCAGCAAGAAG 540 ............................................................ ............................................................ 541 TTATGGGTTCGTGGACTTTAATTGTTGTTTATTTTGTATTTATTTAGGGTATGGTTTTGG 600 ............................................................ ............................................................ 601 ATAATCCAGACAAGAAAAAAAAATTACTACGTTTGTTTAGTATTCTTGAAGTCGAAAACT 660 ............................................................ ............................................................ 661 TTTTAGATTCTGTATTCGGATTTCGGAAAACAACCTAGATGCTTACTGTTTGGTTGATGA 720 ............................................................ ............................................................ 721 TTTTACTAATTTCTATTTGTTTTTGGAAGTAAAAAAAAAAAAAGTTTATGATTCTACCTT 780 ............................................................ ............................................................ 781 CATGTAGAAGAATTATGTCGCGCTTTTACTTACTTTGTTTAATTTAAATTTAAATGTGGT 840 ............................................................ ............................................................ 841 TTTGCTTATCTCTTTGCTTTTGCTTATTAGTTTATGACCAAATAGAGCCTTGGTCACTTG 900 ............................................................ ............................................................ 901 GTTTTTAGTTTCGTCTCTTTGATTAATATTGTATTGCATCCTCACGCTTGGGATGATTCC 960 ............................................................ ............................................................ 961 AGGTTGTGCATCTGAATTACATTTTGGGTCATTGTGTGGAATGAATTGCATATTATCTGT 1020 ............................................................ ............................................................ 1021 GCTGATAGATATTCATGGTTTCTTTGCAGATAAGTTTTTGAGTGTTTCTGTTATTTGCAA 1080 ...........................................................A 1 ...........................................................- 1081 TGGATAAGGATAGGTATGATAGGGAAGATGATGTTTCTAGAGAACGCTGGGATGGAGGAG 1140 2 TGGATAAGGATAGGTATGATAGGGAAGATGATGTTTCTAGAGAACGCTGGGATGGAGGAG 61 1 M--D--K--D--R--Y--D--R--E--D--D--V--S--R--E--R--W--D--G--G-- 20 1141 CCTACAGTGATGAATTAGAGCAAAACGATAAGCATCGGAGTAAGGACAAGAAGAAGAGCA 1200 62 CCTACAGTGATGAATTAGAGCAAAACGATAAGCATCGGAGTAAGGACAAGAAGAAGAGCA 121 21 A--Y--S--D--E--L--E--Q--N--D--K--H--R--S--K--D--K--K--K--S-- 40 1201 GCCTAGAAGAAGAAAAGGATCATCGAAGTAGGGATAGAGAGCGGGACCGTTCAAAGAGAA 1260 122 GCCTAGAAGAAGAAAAGGATCATCGAAGTAGGGATAGAGAGCGGGACCGTTCAAAGAGAA 181 41 S--L--E--E--E--K--D--H--R--S--R--D--R--E--R--D--R--S--K--R-- 60 1261 GTAATGATGAGATCTTGAAAGAAAGGGAGAAAGATTTTAAAGATTTGGAAAAGGATAGAG 1320 182 GTAATGATGAGATCTTGAAAGAAAGGGAGAAAGATTTTAAAGATTTGGAAAAGGATAGAG 241 61 S--N--D--E--I--L--K--E--R--E--K--D--F--K--D--L--E--K--D--R-- 80 1321 TTTCGAGCAGGGAAAGGAGGAAGGATGATAGAGATGAACATGGAAAGGACAGAAGTAGAG 1380 242 TTTCGAGCAGGGAAAGGAGGAAGGATGATAGAGATGAACATGGAAAGGACAGAAGTAGAG 301 81 V--S--S--R--E--R--R--K--D--D--R--D--E--H--G--K--D--R--S--R-- 100 1381 ATAGTAAGGTGAGAGAAAAAGAGAAAGATTATGATAGGGACAAGTATAGAGAAAAAGAAC 1440 302 ATAGTAAGGTGAGAGAAAAAGAGAAAGATTATGATAGGGACAAGTATAGAGAAAAAGAAC 361 101 D--S--K--V--R--E--K--E--K--D--Y--D--R--D--K--Y--R--E--K--E-- 120 1441 ATGAGCGTGAGAGAGAAAAGGATCGAAAGGATCGAGGAAAGGAAAAGGACAGGGAAAGGG 1500 362 ATGAGCGTGAGAGAGAAAAGGATCGAAAGGATCGAGGAAAGGAAAAGGACAGGGAAAGGG 421 121 H--E--R--E--R--E--K--D--R--K--D--R--G--K--E--K--D--R--E--R-- 140 1501 GTAGAGACTCTGAGAAGGAGAGGGGGAAGGATAAAGGTAGAGATAGGGATAGAGAAAAGG 1560 422 GTAGAGACTCTGAGAAGGAGAGGGGGAAGGATAAAGGTAGAGATAGGGATAGAGAAAAGG 481 141 G--R--D--S--E--K--E--R--G--K--D--K--G--R--D--R--D--R--E--K-- 160 1561 AAAAGGAAAGAGACAAGGCCAAGGAAAGAGAGAAAAAGGATCGAGAGAAGGAGAGGGAAG 1620 482 AAAAGGAAAGAGACAAGGCCAAGGAAAGAGAGAAAAAGGATCGAGAGAAGGAGAGGGAAG 541 161 E--K--E--R--D--K--A--K--E--R--E--K--K--D--R--E--K--E--R--E-- 180 1621 GTGAAAAGGATAGGGATAGAGATAGAGAGAAGGGAAAGGAGAGAAGTAAACAGAAAAGTA 1680 542 GTGAAAAGGATAGGGATAGAGATAGAGAGAAGGGAAAGGAGAGAAGTAAACAGAAAAGTA 601 181 G--E--K--D--R--D--R--D--R--E--K--G--K--E--R--S--K--Q--K--S-- 200 1681 GAGAGGCAGACCTAGAGAAGGAGAGATCAAGAGATAGGGATAATGCAATCAAGAAAAACC 1740 602 GAGAGGCAGACCTAGAGAAGGAGAGATCAAGAGATAGGGATAATGCAATCAAGAAAAACC 661 201 R--E--A--D--L--E--K--E--R--S--R--D--R--D--N--A--I--K--K--N-- 220 1741 ATGAGGAAGATTATGAAGGAAGCAAAGATGGAGAGCTTGCATTAGACTATGGAGACAGTA 1800 662 ATGAGGAAGATTATGAAGGAAGCAAAGATGGAGAGCTTGCATTAGACTATGGAGACAGTA 721 221 H--E--E--D--Y--E--G--S--K--D--G--E--L--A--L--D--Y--G--D--S-- 240 1801 GGGATAAGGATGAAGCTGAATTGAATGCTGGCAGCAATGCAGGTGTAGCACAGGCATCAT 1860 722 GGGATAAGGATGAAGCTGAATTGAATGCTGGCAGCAATGCAGGTGTAGCACAGGCATCAT 781 241 R--D--K--D--E--A--E--L--N--A--G--S--N--A--G--V--A--Q--A--S-- 260 1861 CATCAGAGCTTGAGGAGCGCATTGCAAGAATGAAAGAAGAAAGATTGAAAAAGAAATCTG 1920 782 CATCAGAGCTTGAGGAGCGCATTGCAAGAATGAAAGAAGAAAGATTGAAAAAGAAATCTG 841 261 S--S--E--L--E--E--R--I--A--R--M--K--E--E--R--L--K--K--K--S-- 280 1921 AAGGTGTTTCAGAGGTTTTAGAATGGGTTGGTAACTTTCGTAAGCTTGAGGAGAAAAGGA 1980 842 AAGGTGTTTCAGAGGTTTTAGAATGGGTTGGTAACTTTCGTAAGCTTGAGGAGAAAAGGA 901 281 E--G--V--S--E--V--L--E--W--V--G--N--F--R--K--L--E--E--K--R-- 300 1981 ATGCTGAAAAGGAGAAAGCCTTGCAGCGATCAAAGATTTTTGAGGAGCAGGATGATTTTG 2040 902 ATGCTGAAAAGGAGAAAGCCTTGCAGCGATCAAAGATTTTTGAGGAGCAGGATGATTTTG 961 301 N--A--E--K--E--K--A--L--Q--R--S--K--I--F--E--E--Q--D--D--F-- 320 2041 TTCAAGGGGAAAATGAAGATGAGGAGGCTGTCCGTCATGCTGCTCATGATCTAGCAGGGG 2100 962 TTCAAGGGGAAAATGAAGATGAGGAGGCTGTCCGTCATGCTGCTCATGATCTAGCAGGGG 1021 321 V--Q--G--E--N--E--D--E--E--A--V--R--H--A--A--H--D--L--A--G-- 340 2101 TTAAAGTTCTTCATGGCCTTGACAAAGTGATGGATGGTGGAGCTGTTGTTTTGACACTCA 2160 1022 TTAAAGTTCTTCATGGCCTTGACAAAGTGATGGATGGTGGAGCTGTTGTTTTGACACTCA 1081 341 V--K--V--L--H--G--L--D--K--V--M--D--G--G--A--V--V--L--T--L-- 360 2161 AAGATCAGAGCATACTTGCTAATGGTGACATTAATGAAGATGTTGATATGCTTGAAAATG 2220 1082 AAGATCAGAGCATACTTGCTAATGGTGACATTAATGAAGATGTTGATATGCTTGAAAATG 1141 361 K--D--Q--S--I--L--A--N--G--D--I--N--E--D--V--D--M--L--E--N-- 380 2221 TTGAAATTGGAGAGCAGAGGAGGCGGGATGAGGCTTACAAGGCTGCAAAGAAGAAAACCG 2280 1142 TTGAAATTGGAGAGCAGAGGAGGCGGGATGAGGCTTACAAGGCTGCAAAGAAGAAAACCG 1201 381 V--E--I--G--E--Q--R--R--R--D--E--A--Y--K--A--A--K--K--K--T-- 400 2281 GGGTTTATGATGATAAGTTCAATGATGAGCCTGGTTCAGAGAAAAAAATACTTCCTCAAT 2340 1202 GGGTTTATGATGATAAGTTCAATGATGAGCCTGGTTCAGAGAAAAAAATACTTCCTCAAT 1261 401 G--V--Y--D--D--K--F--N--D--E--P--G--S--E--K--K--I--L--P--Q-- 420 2341 ATGACAATCCAGTTGCAGACGAGGGGGTAACTCTGGATGAAAGGGGGCGCTTTACCGGTG 2400 1262 ATGACAATCCAGTTGCAGACGAGGGGGTAACTCTGGATGAAAGGGGGCGCTTTACCGGTG 1321 421 Y--D--N--P--V--A--D--E--G--V--T--L--D--E--R--G--R--F--T--G-- 440 2401 AAGCAGAAAAGAAATTGCAGGAGCTCCGTAAAAGGTTACAAGGTGTTCCCACAAATAACC 2460 1322 AAGCAGAAAAGAAATTGCAGGAGCTCCGTAAAAGGTTACAAGGTGTTCCCACAAATAACC 1381 441 E--A--E--K--K--L--Q--E--L--R--K--R--L--Q--G--V--P--T--N--N-- 460 2461 GTGTTGAAGATCTTAACAACGCTGGGAAGATTGCATCAGATTATTATACCCAAGAGGAAA 2520 1382 GTGTTGAAGATCTTAACAACGCTGGGAAGATTGCATCAGATTATTATACCCAAGAGGAAA 1441 461 R--V--E--D--L--N--N--A--G--K--I--A--S--D--Y--Y--T--Q--E--E-- 480 2521 TGCTTAAATTTAAAAAGCCCAAAAAAAAGAAAGCTTTGCGGAAGAAAGAGAAGCTGGATA 2580 1442 TGCTTAAATTTAAAAAGCCCAAAAAAAAGAAAGCTTTGCGGAAGAAAGAGAAGCTGGATA 1501 481 M--L--K--F--K--K--P--K--K--K--K--A--L--R--K--K--E--K--L--D-- 500 2581 TAGATGCCCTTGAAGCAGAAGCTATCTCTTCAGGCCTGGGAGCTGGAGATCTTGGTTCTA 2640 1502 TAGATGCCCTTGAAGCAGAAGCTATCTCTTCAGGCCTGGGAGCTGGAGATCTTGGTTCTA 1561 501 I--D--A--L--E--A--E--A--I--S--S--G--L--G--A--G--D--L--G--S-- 520 2641 GAAATGATGCTAGAAGACAGGCAATTAGAGAGGAGGAGGCCAGATCTGAGGCTGAAAAGA 2700 1562 GAAATGATGCTAGAAGACAGGCAATTAGAGAGGAGGAGGCCAGATCTGAGGCTGAAAAGA 1621 521 R--N--D--A--R--R--Q--A--I--R--E--E--E--A--R--S--E--A--E--K-- 540 2701 GAAATAGTGCATACCAATCTGCATATGCCAAGGCAGATGAGGCATCTAAATCACTGTGGC 2760 1622 GAAATAGTGCATACCAATCTGCATATGCCAAGGCAGATGAGGCATCTAAATCACTGTGGC 1681 541 R--N--S--A--Y--Q--S--A--Y--A--K--A--D--E--A--S--K--S--L--W-- 560 2761 TTGAACAAACTCTTATAGTTAAACCAGAGGAAGATGAAAATCAAGTGTTTGCTGATGATG 2820 1682 TTGAACAAACTCTTATAGTTAAACCAGAGGAAGATGAAAATCAAGTGTTTGCTGATGATG 1741 561 L--E--Q--T--L--I--V--K--P--E--E--D--E--N--Q--V--F--A--D--D-- 580 2821 ATGATGATCTTTATAAATCCATTGAAAGATCAAGGAAATTAGCTTTTAAAAAGCAAGAAG 2880 1742 ATGATGATCTTTATAAATCCATTGAAAGATCAAGGAAATTAGCTTTTAAAAAGCAAGAAG 1801 581 D--D--D--L--Y--K--S--I--E--R--S--R--K--L--A--F--K--K--Q--E-- 600 2881 ATGAAAAATCAGGTCCTCAAGCTATTGCGCTCCGTGCTACCACAGCTGCTATCAGTCAAA 2940 1802 ATGAAAAATCAGGTCCTCAAGCTATTGCGCTCCGTGCTACCACAGCTGCTATCAGTCAAA 1861 601 D--E--K--S--G--P--Q--A--I--A--L--R--A--T--T--A--A--I--S--Q-- 620 2941 CTGCAGATGATCAAACTACCACAACTGGAGAGGCACAAGAAAACAAGCTTGTAATAACAG 3000 1862 CTGCAGATGATCAAACTACCACAACTGGAGAGGCACAAGAAAACAAGCTTGTAATAACAG 1921 621 T--A--D--D--Q--T--T--T--T--G--E--A--Q--E--N--K--L--V--I--T-- 640 3001 AGATGGAGGAGTTTGTATGGGGTCTTCAGCATGATGAAGAAGCCCATAAACCTGACAGTG 3060 1922 AGATGGAGGAGTTTGTATGGGGTCTTCAGCATGATGAAGAAGCCCATAAACCTGACAGTG 1981 641 E--M--E--E--F--V--W--G--L--Q--H--D--E--E--A--H--K--P--D--S-- 660 3061 AAGATGTTTTTATGGATGAGGATGAAGTGCCGGGAGTTTCTGAACATGATGGAAAAAGTG 3120 1982 AAGATGTTTTTATGGATGAGGATGAAGTGCCGGGAGTTTCTGAACATGATGGAAAAAGTG 2041 661 E--D--V--F--M--D--E--D--E--V--P--G--V--S--E--H--D--G--K--S-- 680 3121 GAGAAAATGAGGTAGGTGGATGGACAGAAGTAGTTGATGCTAGTACAGATGAAAACCCTT 3180 2042 GAGAAAATGAGGTAGGTGGATGGACAGAAGTAGTTGATGCTAGTACAGATGAAAACCCTT 2101 681 G--E--N--E--V--G--G--W--T--E--V--V--D--A--S--T--D--E--N--P-- 700 3181 CCAATGAGGACAAGGATGATATAGTTCCAGATGAAACCATTCATGAAGTTGCAGTTGGTA 3240 2102 CCAATGAGGACAAGGATGATATAGTTCCAGATGAAACCATTCATGAAGTTGCAGTTGGTA 2161 701 S--N--E--D--K--D--D--I--V--P--D--E--T--I--H--E--V--A--V--G-- 720 3241 AAGGATTATCAGGTGCCCTGAAGCTGCTTAAAGATCGAGGAACGCTTAAAGAAAGTATTG 3300 2162 AAGGATTATCAGGTGCCCTGAAGCTGCTTAAAGATCGAGGAACGCTTAAAGAAAGTATTG 2221 721 K--G--L--S--G--A--L--K--L--L--K--D--R--G--T--L--K--E--S--I-- 740 3301 AATGGGGTGGCAGGAACATGGACAAGAAAAAGAGCAAACTTGTTGGCATTGTAGATGATG 3360 2222 AATGGGGTGGCAGGAACATGGACAAGAAAAAGAGCAAACTTGTTGGCATTGTAGATGATG 2281 741 E--W--G--G--R--N--M--D--K--K--K--S--K--L--V--G--I--V--D--D-- 760 3361 ATCGTGAAAATGATAGATTTAAAGATATTCGCATTGAGAGGACAGATGAATTTGGTCGAA 3420 2282 ATCGTGAAAATGATAGATTTAAAGATATTCGCATTGAGAGGACAGATGAATTTGGTCGAA 2341 761 D--R--E--N--D--R--F--K--D--I--R--I--E--R--T--D--E--F--G--R-- 780 3421 TTATAACTCCCAAGGAAGCCTTCCGGGTGCTTTCTCATAAATTTCATGGCAAGGGGCCTG 3480 2342 TTATAACTCCCAAGGAAGCCTTCCGGGTGCTTTCTCATAAATTTCATGGCAAGGGGCCTG 2401 781 I--I--T--P--K--E--A--F--R--V--L--S--H--K--F--H--G--K--G--P-- 800 3481 GCAAAATGAAGCAAGAGAAACGGCAGAAGCAATATCAGGAAGAATTGAAGCTGAAGCAAA 3540 2402 GCAAAATGAAGCAAGAGAAACGGCAGAAGCAATATCAGGAAGAATTGAAGCTGAAGCAAA 2461 801 G--K--M--K--Q--E--K--R--Q--K--Q--Y--Q--E--E--L--K--L--K--Q-- 820 3541 TGAAAAATTCTGATACACCTTCCCTGTCAGTGGAGAGGATGAGGGAAGCTCAAGCTCAGC 3600 2462 TGAAAAATTCTGATACACCTTCCCTGTCAGTGGAGAGGATGAGGGAAGCTCAAGCTCAGC 2521 821 M--K--N--S--D--T--P--S--L--S--V--E--R--M--R--E--A--Q--A--Q-- 840 3601 TGAAAACACCCTACCTTGTCCTTAGTGGTCATGTGAAACCAGGGCAAACGAGTGATCCTA 3660 2522 TGAAAACACCCTACCTTGTCCTTAGTGGTCATGTGAAACCAGGGCAAACGAGTGATCCTA 2581 841 L--K--T--P--Y--L--V--L--S--G--H--V--K--P--G--Q--T--S--D--P-- 860 3661 GAAGTGGCTTTGCTACTGTTGAGAAGGATTTTCCAGGAGGCTTGACACCTATGCTTGGTG 3720 2582 GAAGTGGCTTTGCTACTGTTGAGAAGGATTTTCCAGGAGGCTTGACACCTATGCTTGGTG 2641 861 R--S--G--F--A--T--V--E--K--D--F--P--G--G--L--T--P--M--L--G-- 880 3721 ATAGAAAGGTTGAGCATTTCCTTGGAATTAAGCGCAAGGCTGAGCCAGGGAATTCAAGCA 3780 2642 ATAGAAAGGTTGAGCATTTCCTTGGAATTAAGCGCAAGGCTGAGCCAGGGAATTCAAGCA 2701 881 D--R--K--V--E--H--F--L--G--I--K--R--K--A--E--P--G--N--S--S-- 900 3781 CACCAAAGAAGCCTAAAACCTGAAGTTTGGATTTTTATGGTATTTTCAGCTGGTATGAAG 3840 2702 CACCAAAGAAGCCTAAAACCTGA..................................... 2724 901 T--P--K--K--P--K--T--*-..................................... 907 3841 GGTGGTAAGAAGCAATATTGGATGCTAATTACCATGATGGTTTCGGTTTTTTTTATCAGA 3900 ............................................................ ............................................................ 3901 AGTGCAATTTTCATTTAGGGGGTAGATAAAGAGACTGATTTTGCCCATCCTCCCGTGATG 3960 ............................................................ ............................................................ 3961 ATTCTGTTGTTGTTCTGGCTGTAAATAAGTTACTAGCTTCAAAATAGATAATAATGTTTA 4020 ............................................................ ............................................................ 4021 TTTTTTTTTTTTTTGGCAGAATGATGATGTTAGCTGGAGGCATGACTTAAGAACTGTTCA 4080 ............................................................ ............................................................ 4081 GCTTTAGATTCTTGTTATCTTCACCTTGTTTTCATTTTTACACATACTCAAAATCTGCAC 4140 ............................................................ ............................................................ 4141 TGCCAACTCAAGCATTACCCTAAGTTTTTCCTTCTTTCTTTATTTCATCTGCAATCACTG 4200 ............................................................ ............................................................ 4201 AAATATGCTTCACCCATTTGTATGAGGAATCAACCAAGGATTGTGTAAAACAAAGGTCAA 4260 ............................................................ ............................................................ 4261 ATTATGCAATTAGTTTGTGCTGTCAAAGCGGTGGATTTAGTCTATGAACAACAATGAAAT 4320 ............................................................ ............................................................ 4321 TGAGTCTGAGTA 4332 ............ 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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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