Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

RING/FYVE/PHD zinc finger superfamily protein isoform 2

Location
About this transcript

This transcript has 7 exons and is annotated with 17 domains and features.

Gene

This transcript is a product of gene TCM_020436 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-EOY054251094247aa
 
Protein coding
A0A061EK48 Ensembl Canonical
-EOY054261082237aa
 
Protein coding
A0A061EKN8 -
-EOY054281034231aa
 
Protein coding
A0A061EL72 -
-EOY05427804214aa
 
Protein coding
A0A061EM17 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 CCCATCGAAATTCAACTGCCAAATTCTAAAACCCTAAATCCCTAAAATGTCCTTCATCGA     60
       ..............................................ATGTCCTTCATCGA     14
       ..............................................-M--S--F--I--D      5

                                                                          
    61 TGAATTTCAAGCCGATTTGGAAGCATTGCCCAATATTCTTCAGAAAAAGTATGCGTTGAT    120
    15 TGAATTTCAAGCCGATTTGGAAGCATTGCCCAATATTCTTCAGAAAAAGTATGCGTTGAT     74
     5 --E--F--Q--A--D--L--E--A--L--P--N--I--L--Q--K--K--Y--A--L--M     25

                                                                          
   121 GCGTGATCTTGACAAAAGTTTACAAGAAATTGTGAGGCAAAATGAACAACGCTGTGAACA    180
    75 GCGTGATCTTGACAAAAGTTTACAAGAAATTGTGAGGCAAAATGAACAACGCTGTGAACA    134
    25 --R--D--L--D--K--S--L--Q--E--I--V--R--Q--N--E--Q--R--C--E--Q     45

                                                                          
   181 AGAAATAGAGGATATAAGACGAGGCGTCAGGGCTGGAAACATTACACCAGATACTTCACT    240
   135 AGAAATAGAGGATATAAGACGAGGCGTCAGGGCTGGAAACATTACACCAGATACTTCACT    194
    45 --E--I--E--D--I--R--R--G--V--R--A--G--N--I--T--P--D--T--S--L     65

                                                                          
   241 TCTTAGATTTTCAGACGAGGCACTTGACGAACAAAAGCATAGCATTAGGATTGCGGATGA    300
   195 TCTTAGATTTTCAGACGAGGCACTTGACGAACAAAAGCATAGCATTAGGATTGCGGATGA    254
    65 --L--R--F--S--D--E--A--L--D--E--Q--K--H--S--I--R--I--A--D--E     85

                                                                          
   301 AAAGCAACTTGATCAATATTTGAAAAAGTCTGATGAAGAGCTACGGCGTGAAAGAGAGAA    360
   255 AAAGCAACTTGATCAATATTTGAAAAAGTCTGATGAAGAGCTACGGCGTGAAAGAGAGAA    314
    85 --K--Q--L--D--Q--Y--L--K--K--S--D--E--E--L--R--R--E--R--E--N    105

                                                                          
   361 TGCTGCTGCTACTGCATCCTCTGGTCCAAGTCCTGATAGTACCACTAAATCTGGAAGGCC    420
   315 TGCTGCTGCTACTGCATCCTCTGGTCCAAGTCCTGATAGTACCACTAAATCTGGAAGGCC    374
   105 --A--A--A--T--A--S--S--G--P--S--P--D--S--T--T--K--S--G--R--P    125

                                                                          
   421 TAGTGAAAGTGGAAGAGGAGGGCGTAAAAAAACACGTCTGGCAACAGCAGCAGCAGCCGC    480
   375 TAGTGAAAGTGGAAGAGGAGGGCGTAAAAAAACACGTCTGGCAACAGCAGCAGCAGCCGC    434
   125 --S--E--S--G--R--G--G--R--K--K--T--R--L--A--T--A--A--A--A--A    145

                                                                          
   481 GGCAGCTGCTGCGGCAACTGAAGTGGCGGCAGCAGCAGCAAATCCAACTGGTATGGAACT    540
   435 GGCAGCTGCTGCGGCAACTGAAGTGGCGGCAGCAGCAGCAAATCCAACTGGTATGGAACT    494
   145 --A--A--A--A--A--T--E--V--A--A--A--A--A--N--P--T--G--M--E--L    165

                                                                          
   541 AGATTTGCCAGTGGATCCTAATGAGCCCACTTACTGTTTGTGCAACCAAGTTAGCTATGG    600
   495 AGATTTGCCAGTGGATCCTAATGAGCCCACTTACTGTTTGTGCAACCAAGTTAGCTATGG    554
   165 --D--L--P--V--D--P--N--E--P--T--Y--C--L--C--N--Q--V--S--Y--G    185

                                                                          
   601 AGAGATGGTTGCATGTGATAACCCTGATTGCAAGATAGAATGGTTCCACTTTGGCTGTGT    660
   555 AGAGATGGTTGCATGTGATAACCCTGATTGCAAGATAGAATGGTTCCACTTTGGCTGTGT    614
   185 --E--M--V--A--C--D--N--P--D--C--K--I--E--W--F--H--F--G--C--V    205

                                                                          
   661 TGGTCTGAAAGAACAGCCAAAAGGGAAATGGTATTGTTCAGATTGTGCAGCACTGAGAAA    720
   615 TGGTCTGAAAGAACAGCCAAAAGGGAAATGGTATTGTTCAGATTGTGCAGCACTGAGAAA    674
   205 --G--L--K--E--Q--P--K--G--K--W--Y--C--S--D--C--A--A--L--R--N    225

                                                                          
   721 TCGTCGTAAAGGCAGGGGATGATAAATGTTTTCTTGTCTGGAAAGTGTGCTACTGCATTT    780
   675 TCGTCGTAAAGGCAGGGGATGA......................................    696
   225 --R--R--K--G--R--G--*-......................................    231

                                                                          
   781 GGACAGCCGTCATGTGAAAGCTAACGTTTTACAGCCACATAATCAGGCTGTTAACATTTT    840
       ............................................................       
       ............................................................       

                                                                          
   841 CAATTTCATGCTTCTTTGATTGTATCTCTCTCATGTTCTAGTAAGCTTTGTCTTTTAACT    900
       ............................................................       
       ............................................................       

                                                                          
   901 ATTTTAGCTTTGCTATATAGCTATTTGGATGCTTGTACGATTTTGTTCAAGAGCATTTTG    960
       ............................................................       
       ............................................................       

                                                                          
   961 CTTGAGATCCATGCTGTAAATAAATTCTTCTAATTGTTTAGAGTGTTGATTTGCATTGAA   1020
       ............................................................       
       ............................................................       

                                                                          
  1021 GATGATGCTTTGGT                                                 1034
       ..............                                                     
       ..............