5' upstream sequence
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#008000"]]},"expect":[],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null}},"_messages":[]},"seq":[{"style":[1]}]}}
..........aaggaaaaacttaattataaatcaaataaaaaagaatactcgggttgacc
1 EOY19874-1 23,434,931 23,434,564 0 1 368
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"seq":[{"style":[2]},-2,{"style":[2,-9,1]},{"style":[1]},-1,{"style":[1,-7,0]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[],"flourishes":{}}}
CGTTTGGTGGAACTTACGACCCGACTTCGAACTACACGGTCAAAAACAACCCTACAGTCA ATACTCTCTTTCCCGCTCCCAAAATCCACCAAAAATGAAATTCTGGGTTTAGGGTTTTAA TCCAGTGCTCTGCAACTCCACTCACTTCACTCTGCCTTACGATTTGGGATTGTCCTCCAG GGTTTTCACAATGATGTACGGTGATCCACAACAGCAGCAGAACCAGCCGCCGCCGTCCCA AGGTGGGGAGTTCCCAAGAGGTCCTCCCCCACCGCCCCCGCAAATGATGCGGCAGCCCTC AGCTTCTTCCACTACTCTGAACTCGGAGTATCACCACCCTGCTCCTCCTCAGATTCCGCC TTATGACG
Intron 1-2 23,434,563 23,433,345 1,219
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{},"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]},"seq":[{"style":[1]}]}}
gtagaataataattctcaatttctt..........atttttttaataatgtttctttcag
2 EOY19874-2 23,433,344 23,433,253 1 0 92
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"seq":[{"style":[1]},{"style":[1,-31,0]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
CTCATGGTGACAACTTTGCTGCAAAAAGAATGAGAAAGCTGACCCAAAGGAGAGCTGTTG ATTATACAAGCACTGTTGTGCGATATATGCAG
Intron 2-3 23,433,252 23,432,462 791
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{},"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]}]}}
gtcaatttctcttgtttggtcgttt..........gtaatctattatcatggatctgcag
3 EOY19874-3 23,432,461 23,432,393 0 0 69
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{},"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-8,0]}]}}
ATTCGCATGTGGCAACGAGATTCACGGGACAGGACAGTATTGCAGCCTACTCCAGCAGCA GCAATTGAT
Intron 3-4 23,432,392 23,432,303 90
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gttagtgaacatgctttatcttttt..........tatcatctgttgacctttcatgcag
4 EOY19874-4 23,432,302 23,432,198 0 0 105
{"provisional":{"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-44,0]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
GTGTTGCCCACAGCTGCCTATATAGATAATCCATCCACCAGCTTTGCTGCCAAATTTGTT CATACATCTCTAAACAAAAATCGGTGTTCAATAAATCGTGTTTTG
Intron 4-5 23,432,197 23,431,409 789
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]}}}
gtgagttagattaaaatcaaatttt..........tgctctgaatttttattcatcttag
5 EOY19874-5 23,431,408 23,431,313 0 0 96
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-35,0]}]}}
TGGACTCCCACGGGCAGACGTCTCATCACAGGTTCTCAGAGTGGGGAATTTACTCTATGG AATGGACAGTCATTTAATTTTGAAATGATTCTTCAG
Intron 5-6 23,431,312 23,431,209 104
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtatatttccattagttgtgatgtt..........ccctttttttctttaaaattcttag
6 EOY19874-6 23,431,208 23,431,126 0 2 83
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},{"style":[1,-22,0]}],"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
GCCCATGATCAAGCTATCAGGTCTATGGTATGGAGTCACAATGACAACTGGATGGTTTCT GGTGATGATGGGGGTGCAATAAA
Intron 6-7 23,431,125 23,431,005 121
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}}}
gtatatattactattattctttggt..........gtgtgtatgtggggtttacctttag
7 EOY19874-7 23,431,004 23,430,933 2 2 72
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-11,0]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
GTATTGGCAGAATAACATGAATAATGTTAAGTTCAATAAATCTGCTCACAAAGAATCAGT TCGTGACTTAAG
Intron 7-8 23,430,932 23,430,858 75
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtacctttttaatacttcttttttt..........attaataaacatacccttttaacag
8 EOY19874-8 23,430,857 23,430,760 2 1 98
{"provisional":{"seq":[{"style":[1]},{"style":[1,-37,0]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
TTTCTGTAGGACAGATTTAAAGTTTTGTTCCTGTTCTGATGACACTACTGTAAAAGTGTG GGACTTTGCCCGGTGCCAGGAGGAGCGTTCTTTAACTG
Intron 8-9 23,430,759 23,430,387 373
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtaatgtttcttgactacttatcaa..........ccttacatggtttgaactcaggcag
9 EOY19874-9 23,430,386 23,430,327 1 1 60
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
GCCATGGTTGGGATGTGAAAAGTGTTGATTGGCACCCTACAAAATCCTTACTGGTTTCAG
Intron 9-10 23,430,326 23,430,246 81
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtgtgtctcaagtttatttttgagc..........tcctatttgattggcctttccctag
10 EOY19874-10 23,430,245 23,430,185 1 2 61
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,0]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]}}
GTGGAAAAGACAACCTCGTGAAACTTTGGGATGCTAAGACAGGGAGAGAGCTTTGCTCAT T
Intron 10-11 23,430,184 23,430,104 81
{"provisional":{"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtgagtacactatcctggtaaaact..........gggaagtaatataagtcctttgcag
11 EOY19874-11 23,430,103 23,430,016 2 0 88
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"seq":[{"style":[1]},{"style":[1,-27,0]}],"legend":{"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]}}}
TCATGGCCACAAAAACACAGTACTTTGTGTCAAATGGAACCAAAATGGTAATTGGGTGTT GACTGCTGCAAAGGATCAAATCATCAAG
Intron 11-12 23,430,015 23,429,912 104
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gttagtaccctcttcctctctgcaa..........gttaacttttatttttccttttcag
12 EOY19874-12 23,429,911 23,429,848 0 1 64
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"seq":[{"style":[1]},{"style":[1,-3,0]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]}}}
CTTTATGACATCAGGGCTATGAAGGAGCTTGAATCTTTCCGAGGCCACCGAAAGGATGTG ACTG
Intron 12-13 23,429,847 23,429,619 229
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]},"seq":[{"style":[1]}],"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gttagtcagacttattctaagtgga..........acatgttgatttccaattttgccag
13 EOY19874-13 23,429,618 23,429,540 1 2 79
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-18,0]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
CATTGGCTTGGCACCCATTCCATGAAGAATACTTTGTCAGTGGGAGTTTTGATGGATCCA TTTTCCATTGGCTTGTTGG
Intron 13-14 23,429,539 23,428,993 547
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtaagttttctgattcagaatgtct..........tactaaagatcattctgatgtacag
14 EOY19874-14 23,428,992 23,428,903 2 2 90
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-29,0]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
GCATGAAACTCCCCAGGTTGAAATTCCCAATGCCCATGATAATAGCGTGTGGGATATTGC CTGGCATCCTATTGGATATCTTCTATGCAG
Intron 14-15 23,428,902 23,428,143 760
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]},"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagctcagtctcgtgctgtgcgg..........catttaactcatttttaatatgcag
15 EOY19874-15 23,428,142 23,428,054 2 1 89
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-28,0]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}}}
TGGTAGCAATGATCACACGACAAAGTTTTGGTGCAGAAATAGGCCCGGAGATACTGCTCG TGATAAATTTAGCATGGGTCAGAACCAAG
Intron 15-16 23,428,053 23,427,833 221
{"provisional":{"legend":{"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtttttacttattgccctgctcttt..........taatggccctgtgaactgtatccag
16 EOY19874-16 23,427,832 23,427,309 1 0 524
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"seq":[{"style":[1]},-7,{"style":[1,-43,0]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]}}}
GCTATGGTGAGCAAAACCCTGCACTAGCTGGTCGTATGCCTGGTAATTTTGCAGCACCTG AAGGTCCAACAACTCCGGGACCATATGCTGCTGGATTGACTCGAAATGAGGGAACAATTC CCGGTGTTGGAGTTCCGATGCCATTATCAGTTCCATCTCTTGATGGATCTGCTCAGGGGG ACCAAAAGCAGCCTCTTCCAGGTTCCATGCCTTTTGGAGCTCCTCCTCTTCCTCCCGGTC CACATCCATCTCTTCTTGTTGCCAATCAGCAGCAGGGATATCAACAAAATCCTCAACAGA TGCAACAACAGCAAATGCCTCCTATGCAAATGGCACCTCCAAATATGTCACAGCTACAGC CTCCATCTCATATGCCCCTGCTTCCACATCCTCATTTACAACGCCCTCCACCGCAAATGC CTCCAATTGGTATGCCTTCACCTGTCCCATCCTCAATGCCAGGATCTTTGCCTCCACCTT CATCAATGCCAACATCACATCAAATGCCAATGCCCGGTCCAATG
Intron 16-17 23,427,308 23,426,619 690
{"provisional":{"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtatcacattttacatagctctact..........catcaaacttatttcaaaattctag
17 EOY19874-17 23,426,618 23,426,370 0 0 249
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]},-3,{"style":[1,-8,0]}]}}
GGTATGCAAGGTACAATGAATCAGATGCCTCCTCCAATGCCACAAGGCCATTTTATGGGC ATGAATCCAATGCACTCAGGATCCCTGCCGAACAGTGGTGCCCCTACAGTTGGAGGTTTT CCAAATGGTATGCAAAATATGCAAGGACCAGCAAATGCGGGTGGAGGCCAAATGTATCCA CAGGGTGGTGCATTCAATCGTGCACAGGGTGGACAGATGCCAATGATGCCAGGGTTCAAT CCTTACCAG
Intron 17-18 23,426,369 23,425,817 553
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null}},"_messages":[]},"seq":[{"style":[1]}]}}
gtaaattagagaaggttctttgttg..........cttgttatactttcacttattgcag
18 EOY19874-18 23,425,816 23,425,072 0 1 745
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[],"flourishes":{},"seq":[{"style":[1]},{"style":[1,-11,2]},{"style":[2]},-9,{"style":[2,-24,0]}],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]}}}
TCTGGTGGTCAGTCTGGTCTGCCGCCTCCACCACCGCCAGGTCCCCCACCTCATGGTCAA ACACCGCAGTAGACTTAAGGTAGAAGAACATTTTACAGTCATGCTGCCATCCGACTGAGT GGAAAGCATTGTGTCTCCTGTGTATTCCTTTTAGTTTTTTTTTTTTTTAAATTATTTTTG GCTTCCTTAATATTGACATTTTCTTTGGACTTGCTGGAACAGTCATTGAGATGGCATCAC TAAGCAAATGGTTTTTGTTGATTTTTGCTAAAATGTATATTTAAAGAATGCTTGAAAGCT TAATCCTCATTTTGCCTGAGCTTTTCTACTTTGTATATACTTTTGGCAGCTTAAGTTCCA TTTGAGTTTTCTTCCTCTTTTTCTTGCTTAAATAAGTCCGAACATAATTTGACACTAATG ATTTTCTATTTTGATAGTATACATGTTTTTTTAATAAACAAATACATTGCTAGTGTTGCG CGCTCACACTTCTAATTTAAAAAATATTTATTAGGTGATGATTTGATTTATATGTTTATG ATTTATTTTATTTCTTTTTTATATGAGATTTTCGTTGCATTGATTTTATCACAAATAGAG GACAGTTTTTACTTTGGTGAGGATTTAATTTTATCGTAGTATTTCTCATGATAGGATTTT ACTTCAATGAATAATTGAGTAAGCTTTGATACCATTTGTTATGAGATCATTTTTTCAATT CAAAAAATACATCAAGATTCATTTC
3' downstream sequence
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"expect":[],"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"}},"_messages":[]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_045257;r=100X0P+023425072-23434931;t=EOY19874;db=core;time=1743781092441.441;adorn=only"}
gtttcttttggatatgagatttttgttatattgattttatcacacaaaaa..........
Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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