5' upstream sequence
..........gattattctcttattttatttataaatacaaactatctttttattttatt
1 EOY19456-1 17,849,313 17,850,191 0 0 879
AATAATTTTCTCAAGTTCTGAAATTATATTTCACTAACACATCTTAAGTTGAGTTGCAGG TTTTTATTTTATTTCAATGAGTTGTAATCTTAGCTTACTGGAACTATAGAGAGTCCCTCA CTCTTCTGGTTAACCCGAATTATCCCAAAATTAATCAATTTTCTTCAATTTCCTCCGCCT CGCCACTCTCTCTTGGCTGAA ATGGCCAACTTCTTCTCCAAGGCGGAGGTGACGAGCAGC GGACGCCCCGTCCTCCTACGCAGCGAAGTCGAATGCCACCTTCTCTCCTCTGTAGACCTC GAACCCGAAGACCACCACAATTTCTCCCCCTTAAAGTCGGGCCTCCTCATCCTCACCACT CACCGCCTCCTCTGGCTCCCTTCTTCTTCCGCCAGCACCCCTACTTCCGCCGCTGCCATC CCTCTTCCCGCTATTTCCCACATCTTCTCCTCCAAAAAATCTCTCAAGTCCATGTTCCAC TCCCCCAGGATCCGCTTCCAAGTCCTCGTCTCACCGGATGGTCGGGTTTTCGATCCGGGT TCCGGTTCTGGGTCTGGTTCTGGTTTGGGCTCAAGATCGGTTGTACTGACAGCGGTGGTT AGGGGGAAGGGGGATTGTGATGGGTTTTTGGGAAAGTTTTGGGACAGTTGGCGAGCGAGG GCTTGGGAGACTAATGAGACTTCCGGTTCTGGCTCGAGTTCGGTTTCGGGTTCAGGCACA GGCACAGGCACGGGCACGGGCACGGGTGGAGGGTTGTATTCGAGTGACGGTTCAGTTAGG ATGGTTGGGGTGGCGGGAATTTTAAGGAAGGAGCAGGAATTGTGGGAGAGTACTGATAAG AGTTTGCAGGATGCTTTTCAGGACTTAAATGCTCTCATG
Intron 1-2 17,850,192 17,850,750 559
gtaatgcacttctttttgttattat..........ttttagaactctttctgattttcag
2 EOY19457-2 17,850,751 17,850,954 0 0 204
AGTAAAGCTAAAGAGATGGTGATGTTAGCAGAGAAAATGAGGCAAAAGCTTTTGTCTGGA ACAAATTCTCAAGCAAGTGCAACAAATGATGAGGATATGGGTTCAAAAGAAGAGATGCAA GATTGGTTGTTGAGTGTTGGTATAATATCCCCTGTAACTAAGGAATCTGCAGGTGCCCTG TACCATCAACAATTGTCCCGTCAG
Intron 2-3 17,850,955 17,856,330 5,376
gttctcttctctctttttatctttg..........ttgattttatttcttgacacctcag
3 EOY19457-3 17,856,331 17,856,424 0 1 94
CTGGCAGATTTTGTGAGAACTCCACTAGAGAGAGCAGGTGGAATGATCAACCTTATTGAT GTTTATTGTCTCTTCAATCGTGCTCGAGGCACAG
Intron 3-4 17,856,425 17,857,448 1,024
gtttggtttaacactaacttctttt..........cttctttgaatctctttgtcctcag
4 EOY19456-4 17,857,449 17,857,506 1 2 58
AATTGATCTCTCCAGATGATATGCTGCAAGCATGTTCTTTGTGGGAGAAATTTGATGT
Intron 4-5 17,857,507 17,857,605 99
gtatgtatgatattattttcatttt..........tatcacattgcactttgtttaacag
5 EOY19456-5 17,857,606 17,857,675 2 0 70
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"seq":[{"style":[1]},{"style":[1,-9,0]}],"expect":[],"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}}}
TCCAGTGATGCTTAGGAAGTTTGATAGTGGAGTCATGGTCATCCAAAACAAGTCCCATAG TGATGAGGAG
Intron 5-6 17,857,676 17,860,425 2,750
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"}},"_messages":[]},"expect":[],"seq":[{"style":[1]}],"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only"}
gtaatccatttcaattttactgtct..........aaataacttgtcctgtcatgtgtag
6 EOY19456-6 17,860,426 17,860,561 0 1 136
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null}},"_messages":[]},"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-15,0]}]}}
GTTTTTGTTAGAATCAAAAGCCTCGTGACTAAGCCTGAAGCCCTTCGAAGTGGCATAAGT CCAAGTGATGCTGCAATGACACTAGGGATTGCTCCAGCTATGGCCAAGGAGCATCTTCTA ACTGCTGAGAGCACAG
Intron 6-7 17,860,562 17,860,646 85
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"expect":[],"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"}},"_messages":[]},"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only"}
gtacccctttgctttgctttctctt..........gtaaatttctgttttacattggcag
7 EOY19456-7 17,860,647 17,860,731 1 2 85
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},{"style":[1,-24,0]}],"expect":[],"legend":{"exons/Introns":{"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"}},"_messages":[]},"flourishes":{}}}
GTTTGCTATGCAGAGATGTAAGCCCTGATGGCTTTCGCTTTTATATTAACCTGTTTCCTG AAATTGATCCACGTGATGTCTACTT
Intron 7-8 17,860,732 17,862,048 1,317
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null}},"_messages":[]},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagtcagatgcttctattaattt..........gtattaatgcacattaaatttgtag
8 EOY19456-8 17,862,049 17,862,102 2 2 54
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"exon1":{"class":"e1","default":null,"label":"#1044ee","text":"Translated sequence"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"}},"_messages":[]},"expect":[],"seq":[{"style":[1,-53,0]}],"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only"}
AGTGAAGGATTATGGGATCTGCGATACCTGGATCAAAGCAGTTTCTACTTCTGG
Intron 8-9 17,862,103 17,862,255 153
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","label":"#008000","class":"ef"},"utr":{"text":"UTR","label":"#cd6839","default":null,"class":"eu"},"exon1":{"class":"e1","default":null,"label":"#1044ee","text":"Translated sequence"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null}},"_messages":[]},"seq":[{"style":[1]}],"expect":[],"flourishes":{}}}
gtaagggttcctttttgattaattg..........tgtttattctctggattctttttag
9 EOY19456-9 17,862,256 17,862,639 2 2 384
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"legend":{"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null},"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"}},"_messages":[]},"seq":[{"style":[1,-9,2]},{"style":[2]},-4,{"style":[2,-23,0]}],"expect":[],"flourishes":{}}}
GTTGAGATAA ATGCATTTGGCTATAGATTTCTGAAATCTCTCTCAGACAACTCTCTACAT GCTCGACTAGGATGATGTATATTCTGCGTGTGAGTAACTTACTATCCAGTCTGCTTCTTG TCGTTGTGAATACGAATAACTTTCAATTCAGCAGAACACGAGGGAAGCTGGTAAGCAACT CAGCATCTGGTTTTGAACTTTTGATCATCATTTGTTCATTGTAACAAGAGAACAGTCAAT CCTTCCATTGAGATCTTGAAGCATACTCGACAGAGTTTATTGGGTGTGGATAATAAATAA ATCCGTACTGTCTCTTTTGAATTTATTAAAGATCCACCAAAACCAATATGGGAGCAGAGC CAACAATAAGATTATCAAGCTGTG
3' downstream sequence
{"provisional":{"flourishes":{},"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"}},"_messages":[]},"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_044579;r=100X0P+017849313-17862639;t=EOY19456;db=core;time=1755192712544.544;adorn=only"}
ctgagaatattattcatgttggtaattgtgttttggtgttactcttatta..........
Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
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