5' upstream sequence
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]}],"expect":[],"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}}},"ref":{"style":[[0,""],[0,"color:#008000"]]},"flourishes":{}}}
..........tttttgtacacttcatgtgtgcaagagtattcttacagcctctgtttaat
1 EOY31276-1 7,987,168 7,988,219 0 0 1,052
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[2]},-14,{"style":[2,-28,1]},{"style":[1]},{"style":[1,-31,0]}],"expect":[],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"exon1":{"class":"e1","default":null,"label":"#1044ee","text":"Translated sequence"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"flourishes":{}}}
ATCTACAAGGGGAGGGAAGGGAGAGAGAGCAGAAGAGGAGGAGAAGAGGGGAAAGGAGAA GACGAGGCTCCTGTTGTTTTGATTGCTTTAAAAAAGAAGAGGGATACGAAGGTAAGAAGT GGGTACTTGAGTGACCTTCTTTGGCTAAGGAGTAGAAAAGTAAGAAAATCTACCTTACAT GTCCTTCCTAATTATATTTATAACAAAGGGTAATTTTGTTTGTAAAAAGAACTTTTGATG AAGAATCTTTTTCTTCCATTAAATCTTTCTCAAACTAGGAAGAGGGTACAATTTCCTACC CTTTCTTTTCCTTCTCCATAACCCAAATCTACCTTAGTGTTTGTGTATAGTGGAAAAATC TTTTTTGTTCATTTGTTGGGGGGGGGCGGCCGGGTGGAAGATAATAAATAAGTGATAGAA TCATTGATGGCTAACCTAATTCAGTTTTGTTGAAAGTGTGCTTCACTGAACTTCTAAACG TAGGTGTGTATCCTTGTATTTTATGGAGAAGAGAATGCAAAATTTTGATGATTTCGTGCA ATGAAGCAAGATTTTTTTCCTTGTGTCTTTTTTTTTCTGTAATTTCCAGTGAACACCCCC TTAGTAATGATGCAACTTATTGAGACTTCCCCTGTCACTTTTTTCTGAACTTTTGTAGTC CCTGACATAGCATGTTATGATTTGATAAATTCAAAGATGGCTACCAAGTTATGGGTTAAT CAATTAATTTATAAATGAGATATTAGAGTCAAATGAATATAATATCTCCTCATCAGGTGG GACAAATGTGTTGGGATAAAAGTGTTGAGGCAAATAGTATTTTTCATATTGTTTTGGCTG TTTGATACAAAATGAAAAATTTATGTTTTGCCACCTACAAATCTTTCATTTTGTTTCTTC ATTACAGGTGTCTGTGTGGTCAGTGAATA ATGGGAAGCACTGGTGCTGATAAAGTTCCAA GAGATAGTGAAACTGAAGGTTCTGAGACCACAATAGAAATAAAAATAAAAACACTGGACT CTCAGACTTATACTTTGAGAGTAGATAAACAG
Intron 1-2 7,988,220 7,988,674 455
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"}}},"seq":[{"style":[1]}]}}
gtaaataactcttatgctgttttgt..........gtttcttgtctcttatatcttacag
2 EOY31276-2 7,988,675 7,988,792 0 1 118
{"provisional":{"seq":[{"style":[1]},{"style":[1,-57,0]}],"expect":[],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
ATGCCAGTGCCTGCACTAAAAGAACAGATTGCTTCTGTAACTGGTGTGTTATCAGAGCAA CAACGACTAATATGTCGTGGGAAAGTTCTAAAGGATGACCAACTACTTTCTGCTTACC
Intron 2-3 7,988,793 7,988,989 197
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"expect":[],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}]}}
gtatccattttcattttaaatattc..........atctgagtttcttaacttgagatag
3 EOY31276-3 7,988,990 7,989,067 1 1 78
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]},{"style":[1,-17,0]}],"expect":[],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{}}}
ATGTCGAGGATGGTCACACATTGCACATGGTGGTCAGGCAGCCGGTTCCACCATCATCTG ATGGCTCACCTCATTCAG
Intron 3-4 7,989,068 7,992,169 3,102
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}}},"seq":[{"style":[1]}]}}
gttttgctgcactttaggatccatt..........taacatttagcaccatcatttgcag
4 EOY31276-4 7,992,170 7,992,288 1 0 119
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]},{"style":[1,-58,0]}],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]}}
CAAATGATTCTGCATCAGGTACAAGCCGTGGTCACAGTAATCATGTAGCCCCTAGTGTTG TGATAGAAACTTTTAATGTGCCTGATCAAGGGGATGGAGTTCCTCCTGAGATCAGTCGG
Intron 4-5 7,992,289 7,992,392 104
{"provisional":{"expect":[],"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtaagtttgcaactggatgtgaact..........aagactcttctttccttctgagcag
5 EOY31276-5 7,992,393 7,992,464 0 0 72
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]},{"style":[1,-11,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"expect":[]}}
ATTGTCTCTGCCGTTCTTGGCTCTTTCGGATTTGCAAATGTAGGAAGTGGAAATATTGGG GGTGATGTCAGG
Intron 5-6 7,992,465 7,993,560 1,096
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"text":"Intron sequence","default":null,"label":"#aaaaaa","class":"ei"},"exon1":{"class":"e1","text":"Translated sequence","default":null,"label":"#1044ee"},"flanking":{"label":"#008000","default":null,"text":"Flanking sequence","class":"ef"}}},"flourishes":{},"expect":[],"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtaagttttaactttttaattttca..........tcattggagttgttggatacaaaag
6 EOY31276-6 7,993,561 7,993,722 0 0 162
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"exon1":{"class":"e1","label":"#1044ee","default":null,"text":"Translated sequence"},"flanking":{"text":"Flanking sequence","default":null,"label":"#008000","class":"ef"}}},"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-41,0]}]}}
GAACATGGTTCACAAAGACTTGAAAGAACATCTGGTGCTAGTGGCATGCCAGATTCATCC CAAGCTCAAACGGAACAAGCTAGCATGAGGGGTCAATCTGATAGAGTACATAGTGCTTTT GGACTTCCAGCAGCAGTTTCCTTGGGGCCTCTGCAACCTCCT
Intron 6-7 7,993,723 7,993,873 151
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"}}},"flourishes":{},"expect":[],"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtgagtttataagtcctaactttct..........ttttcaatgttctttatttttgtag
7 EOY31276-7 7,993,874 7,993,943 0 1 70
{"provisional":{"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"class":"e1","text":"Translated sequence","default":null,"label":"#1044ee"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"seq":[{"style":[1]},{"style":[1,-9,0]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
GTTATTCCTGATTCTTTGGCAACTTTGTCCCAATATCTGAGTCATTTACGACGTGAATTT GATGGCATTG
Intron 7-8 7,993,944 7,994,042 99
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gttagttttcctttgtcaaaaagta..........gatttgcaactcatctcactgccag
8 EOY31276-8 7,994,043 7,994,221 1 0 179
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"}}},"flourishes":{},"expect":[],"seq":[{"style":[1]},-1,{"style":[1,-58,0]}]}}
GTAGAGCTGGGGGAGAGGATCCTCAGGCAGCATCCTTGAGTAGGACTGGAGATAGAGATT CTAACCCTGCATCAAATTCAGGGACTGTACAGGAAGGTCTTCCAACACCTGCATCTTTGG CAGAAGTGTTACTCGCTACCAGACAACTGCTCATTGAACAAGCTGGAGAATGTCTACAA
Intron 8-9 7,994,222 7,994,482 261
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"text":"Flanking sequence","label":"#008000","default":null,"class":"ef"}}},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtgtgtcctgaactaccttttagtt..........taatttcttttgatttgatgggcag
9 EOY31276-9 7,994,483 7,994,647 0 0 165
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","default":null,"text":"UTR"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"flourishes":{},"seq":[{"style":[1]},-1,{"style":[1,-44,0]}]}}
CAACTTGCAAGGCAACTGGAGGATCAAGGAAATGTGACGGACTCCTCAGCACGGCTGAGT GCACAGTCCATTGCTTGGAGAACTGGAGTTCTATTACAGAACCTAGGCTCACTTTTCCTT GAGCTTGGTCGTACAACCATGACAATTCGCTTAGGTCAAACACCG
Intron 9-10 7,994,648 7,994,735 88
{"provisional":{"seq":[{"style":[1]}],"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","default":null,"class":"eu"},"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}}}},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtaagataatcgcattctacatcga..........ttgctataacttatttcttttgcag
10 EOY31276-10 7,994,736 7,994,807 0 0 72
{"provisional":{"seq":[{"style":[1]},{"style":[1,-11,0]}],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"intron":{"text":"Intron sequence","default":null,"label":"#aaaaaa","class":"ei"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
TCTGAAGCTGTTGTTAATGCTGGACCTGCAGTTTTCATATCCCCTTCTGGTCCGAATCCT CTCATGGTTCAG
Intron 10-11 7,994,808 7,994,890 83
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"}}},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gcaatgttctaacagcctttttgaa..........tgctgatttatctgtatttgttcag
11 EOY31276-11 7,994,891 7,995,020 0 1 130
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]},-1,{"style":[1,-9,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"label":"#cd6839","class":"eu"},"intron":{"class":"ei","default":null,"label":"#aaaaaa","text":"Intron sequence"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","default":null,"label":"#008000"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"expect":[]}}
GCTCTTCCTTTTCAACCAGGAACTAGCTTTGGTGCCTTTCCCATGGGAACTGTACAGCCT GGATCTGGTTTGGTTAATGGACTTGGGACAGGGCTTCTTCCTAGGCGTATTGATATACAA ATAAGAAGAG
Intron 11-12 7,995,021 7,995,100 80
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","label":"#cd6839","default":null,"class":"eu"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"expect":[],"seq":[{"style":[1]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
gtatgctatacctggctattttctc..........acactgatgttgtatttacaataag
12 EOY31276-12 7,995,101 7,995,523 1 1 423
{"provisional":{"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"text":"UTR","class":"eu"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}},"expect":[],"seq":[{"style":[1]},-6,{"style":[1,-2,0]}]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
GTTCATCGGTGGCAACACCCAATGTTAATCGAGAGGAACGTGGTGATACTGCACAACAAT CAGGCCAAAGGAACCCATCAATGGGTTCTGGCAGTGAGAATCGTAGCACTCAAACAAGTT CAAGGGTCTCAGATACTCCATCTTTTGCTGGGGAATCAGGAGTGCGGGTAGTGCCAATTA GGACCATGGTTGCGGCTGTACCCACTCCCTTTGGTCGCTTACCGTCAGATTCTTCTGGTA ATTCTGTGGGATTATACTACCCATTCCTTGGAAGATTCCAGCACATTGCTTCCGGACATG TTAGTGGGGAACGGGGATCTCAGGGATCTGGTGAGAATCTCTCCCATGGTGTTCAATCTG AGCAGCACCTTATTCCTGAATCTACAGCGCAACAACAAAGTTTCGAAGAGTCAACTAGAG ATG
Intron 12-13 7,995,524 7,996,056 533
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"text":"UTR","class":"eu"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"flourishes":{},"expect":[],"seq":[{"style":[1]}]}}
gtaatatgataaatccagcacttca..........actgtcaaattgcttcttgttggag
13 EOY31276-13 7,996,057 7,996,433 1 0 377
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GTTCATTGCCAAATCCTAATTCAAGACAACAGGAGCGATCCAATACTCGCAGTGTCAGTA TAAACATTCTAGCAGCTGGCCGGACTCAAAACAACCAAGACTCAGAGAGACAAATTCCTA GTAGTGTTCAGTTTCTGAGGGCAATTTTCCCTGGTGGTGAAATCAATGTAGAGGAAGCAA GTGTACAAGGAGCAGCTACAGGTTCTGTCCAAGAGCAAGCAGGGACTTCCAGTGGTGCTC CAGCGGCTGAGCCAAGTATTACTGATCAAGGGGTGTTTTTATCTAATTTGCTTCATCAGA TCATGCCATACGTACCTCAGCAAGCAAGTTCACAACAAAGTACTGTGCCTACAGAGGAAG CAAATACTTCCACCCAG
Intron 13-14 7,996,434 7,996,735 302
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"flourishes":{},"seq":[{"style":[1]}]}}
gtaagcatgcttgccattcttagtt..........aagatgctaaatgctgctgtatttt
14 EOY31280-14 7,996,736 7,996,816 0 0 81
{"provisional":{"seq":[{"style":[1]},{"style":[1,-20,0]}],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"text":"UTR","class":"eu"},"intron":{"class":"ei","label":"#aaaaaa","default":null,"text":"Intron sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","default":null,"class":"e1"},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
CAGGCTGAGCACACTAGTCCTGGGAGTTCACGTAGACCAAGTGACTCTGAACCAAATTCA CCAAACTCAAAACGTCAGAAG
Intron 14-15 7,996,817 7,997,738 922
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]}],"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","text":"UTR","default":null,"label":"#cd6839"},"intron":{"text":"Intron sequence","label":"#aaaaaa","default":null,"class":"ei"},"exon1":{"text":"Translated sequence","default":null,"label":"#1044ee","class":"e1"},"flanking":{"class":"ef","text":"Flanking sequence","label":"#008000","default":null}}},"flourishes":{}}}
gtactggttctgaatacttttgtta..........gaaatgaaatggctttttgttgcag
15 EOY31280-15 7,997,739 7,998,744 0 1 1,006
{"provisional":{"seq":[{"style":[1,-8,2]},{"style":[2]},-14,{"style":[2,-45,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"label":"#cd6839","text":"UTR"},"intron":{"class":"ei","text":"Intron sequence","default":null,"label":"#aaaaaa"},"exon1":{"label":"#1044ee","default":null,"text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","default":null,"label":"#008000","text":"Flanking sequence"}}},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"flourishes":{},"expect":[]},"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only"}
ACAGAGTAGCTTGTCAAGAGAATGAGGATTTGACTAGCTTCCCATGGTTATAAAAGGAAA TCGCTTTTTGTTGCAGAGAGAGTAGCTTATGAAGAGAGGGAGGATTTAACTAGGCTTCCC ATGGTTATGAAATGAAATGGCGTCTTGTTGCAAGACAAAGTAACTTATCAAAAGATGGAG GATTTAACTAAGCTTCCCATGGTTGTGAAATTTGTGATTGCTGATTTGAGCACTTGTTGG CACGAAAAGCGGCATGACTTTTATGTTAAATGTGGTATACCATGTTTGTTGTATTTCAAA TATGGCATTTGATAATTAGTATAGGGAAATATGTTGTCACAGTTTTTGGTCTTTTGACTT GTACAATATAGTAATATGTTTTGCATGGGGTTTTACTGGATTTTTCCATGTGTAGCCCCA TCCATCATCTAGCTTCTCTTGAGCGTCTGTGGCTTTTGATTCCCGATTTTATTTTTGTAC ATCCAAATTGCATCATGGTTGCATGGAAGAATTCTGCAAGGGCAAGCTACTGCATTGGCG GATGTTATGGGAACATTTTGCTTTAACCATTTACATCTTCAGCAACTACAATGCAAACCA TGAAGCGAACCTCTTACTCTCATGCTTTATTTATGGTTTGAAATAATGTAAGAGCGTTCA ATTCTAATGCTAAGCCATCTTTTCTTGGCTCGAGTCACGAGTTGTGGCCATGTGGTTGGT TAAGTGATAGCTATTGTTTTTTAGCAAACCTTACGTAATTATCCTTTGAACATATTGCTA GTAATTTGTACAGAAAGTACACATGTTCGAATTAAACGACCTTCTATATATTTAAATTTA AAACCCGAGGGCAAGAGTTTGATCCATTTATGAAGAAGAGAAGATTATTATTATGCACGT GATCGTAACTGCACAATTAACTTAAGGATGCTTGTGTATATACTCAACAAGGTAGTCAGG CATTTCTGTAAATAGCTTAATAAGGGTGAGGTTAGTTTTGTAAATA
3' downstream sequence
{"url":"/Theobroma_cacao/Component/Transcript/Exons/exons?g=TCM_038245;r=90X0P+07987168-7998744;t=EOY31280;db=core;time=1749708813968.968;adorn=only","provisional":{"seq":[{"style":[1]}],"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"intron":{"label":"#aaaaaa","default":null,"text":"Intron sequence","class":"ei"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"},"flanking":{"class":"ef","label":"#008000","default":null,"text":"Flanking sequence"}}}}}
aacaacaagttatttacttactttggcagccgtaaataaatctgcatttt..........
Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
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