Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

Ubiquitin-like superfamily protein, putative isoform 8

Location
About this transcript

This transcript has 15 exons and is annotated with 27 domains and features.

Gene

This transcript is a product of gene TCM_038245 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
-EOY312764103730aa
 
Protein coding
A0A061GP38 -Ensembl Canonical
-EOY312798489724aa
 
Protein coding
A0A061GVZ5 --
-EOY312847640579aa
 
Protein coding
A0A061GVZ9 --
-EOY312826947575aa
 
Protein coding
A0A061GPF9 --
-EOY312816947575aa
 
Protein coding
A0A061GPF9 --
-EOY312836933575aa
 
Protein coding
A0A061GPF9 --
-EOY312776450724aa
 
Protein coding
A0A061GQ58 --
-EOY312786449729aa
 
Protein coding
A0A061GPF4 --
-EOY312746085724aa
 
Protein coding
A0A061GVZ5 --
-EOY312754305579aa
 
Protein coding
A0A061GVZ9 --
-EOY312804104725aa
 
Protein coding
A0A061GN58 --
Markup
  • loaded
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tttttgtacacttcatgtgtgcaagagtattcttacagcctctgtttaat
1EOY31276-17,987,1687,988,219001,052
ATCTACAAGGGGAGGGAAGGGAGAGAGAGCAGAAGAGGAGGAGAAGAGGGGAAAGGAGAA
GACGAGGCTCCTGTTGTTTTGATTGCTTTAAAAAAGAAGAGGGATACGAAGGTAAGAAGT
GGGTACTTGAGTGACCTTCTTTGGCTAAGGAGTAGAAAAGTAAGAAAATCTACCTTACAT
GTCCTTCCTAATTATATTTATAACAAAGGGTAATTTTGTTTGTAAAAAGAACTTTTGATG
AAGAATCTTTTTCTTCCATTAAATCTTTCTCAAACTAGGAAGAGGGTACAATTTCCTACC
CTTTCTTTTCCTTCTCCATAACCCAAATCTACCTTAGTGTTTGTGTATAGTGGAAAAATC
TTTTTTGTTCATTTGTTGGGGGGGGGCGGCCGGGTGGAAGATAATAAATAAGTGATAGAA
TCATTGATGGCTAACCTAATTCAGTTTTGTTGAAAGTGTGCTTCACTGAACTTCTAAACG
TAGGTGTGTATCCTTGTATTTTATGGAGAAGAGAATGCAAAATTTTGATGATTTCGTGCA
ATGAAGCAAGATTTTTTTCCTTGTGTCTTTTTTTTTCTGTAATTTCCAGTGAACACCCCC
TTAGTAATGATGCAACTTATTGAGACTTCCCCTGTCACTTTTTTCTGAACTTTTGTAGTC
CCTGACATAGCATGTTATGATTTGATAAATTCAAAGATGGCTACCAAGTTATGGGTTAAT
CAATTAATTTATAAATGAGATATTAGAGTCAAATGAATATAATATCTCCTCATCAGGTGG
GACAAATGTGTTGGGATAAAAGTGTTGAGGCAAATAGTATTTTTCATATTGTTTTGGCTG
TTTGATACAAAATGAAAAATTTATGTTTTGCCACCTACAAATCTTTCATTTTGTTTCTTC
ATTACAGGTGTCTGTGTGGTCAGTGAATAATGGGAAGCACTGGTGCTGATAAAGTTCCAA
GAGATAGTGAAACTGAAGGTTCTGAGACCACAATAGAAATAAAAATAAAAACACTGGACT
CTCAGACTTATACTTTGAGAGTAGATAAACAG                            
 Intron 1-27,988,2207,988,674455
gtaaataactcttatgctgttttgt..........gtttcttgtctcttatatcttacag
2EOY31276-27,988,6757,988,79201118
ATGCCAGTGCCTGCACTAAAAGAACAGATTGCTTCTGTAACTGGTGTGTTATCAGAGCAA
CAACGACTAATATGTCGTGGGAAAGTTCTAAAGGATGACCAACTACTTTCTGCTTACC  
 Intron 2-37,988,7937,988,989197
gtatccattttcattttaaatattc..........atctgagtttcttaacttgagatag
3EOY31276-37,988,9907,989,0671178
ATGTCGAGGATGGTCACACATTGCACATGGTGGTCAGGCAGCCGGTTCCACCATCATCTG
ATGGCTCACCTCATTCAG                                          
 Intron 3-47,989,0687,992,1693,102
gttttgctgcactttaggatccatt..........taacatttagcaccatcatttgcag
4EOY31276-47,992,1707,992,28810119
CAAATGATTCTGCATCAGGTACAAGCCGTGGTCACAGTAATCATGTAGCCCCTAGTGTTG
TGATAGAAACTTTTAATGTGCCTGATCAAGGGGATGGAGTTCCTCCTGAGATCAGTCGG 
 Intron 4-57,992,2897,992,392104
gtaagtttgcaactggatgtgaact..........aagactcttctttccttctgagcag
5EOY31276-57,992,3937,992,4640072
ATTGTCTCTGCCGTTCTTGGCTCTTTCGGATTTGCAAATGTAGGAAGTGGAAATATTGGG
GGTGATGTCAGG                                                
 Intron 5-67,992,4657,993,5601,096
gtaagttttaactttttaattttca..........tcattggagttgttggatacaaaag
6EOY31276-67,993,5617,993,72200162
GAACATGGTTCACAAAGACTTGAAAGAACATCTGGTGCTAGTGGCATGCCAGATTCATCC
CAAGCTCAAACGGAACAAGCTAGCATGAGGGGTCAATCTGATAGAGTACATAGTGCTTTT
GGACTTCCAGCAGCAGTTTCCTTGGGGCCTCTGCAACCTCCT                  
 Intron 6-77,993,7237,993,873151
gtgagtttataagtcctaactttct..........ttttcaatgttctttatttttgtag
7EOY31276-77,993,8747,993,9430170
GTTATTCCTGATTCTTTGGCAACTTTGTCCCAATATCTGAGTCATTTACGACGTGAATTT
GATGGCATTG                                                  
 Intron 7-87,993,9447,994,04299
gttagttttcctttgtcaaaaagta..........gatttgcaactcatctcactgccag
8EOY31276-87,994,0437,994,22110179
GTAGAGCTGGGGGAGAGGATCCTCAGGCAGCATCCTTGAGTAGGACTGGAGATAGAGATT
CTAACCCTGCATCAAATTCAGGGACTGTACAGGAAGGTCTTCCAACACCTGCATCTTTGG
CAGAAGTGTTACTCGCTACCAGACAACTGCTCATTGAACAAGCTGGAGAATGTCTACAA 
 Intron 8-97,994,2227,994,482261
gtgtgtcctgaactaccttttagtt..........taatttcttttgatttgatgggcag
9EOY31276-97,994,4837,994,64700165
CAACTTGCAAGGCAACTGGAGGATCAAGGAAATGTGACGGACTCCTCAGCACGGCTGAGT
GCACAGTCCATTGCTTGGAGAACTGGAGTTCTATTACAGAACCTAGGCTCACTTTTCCTT
GAGCTTGGTCGTACAACCATGACAATTCGCTTAGGTCAAACACCG               
 Intron 9-107,994,6487,994,73588
gtaagataatcgcattctacatcga..........ttgctataacttatttcttttgcag
10EOY31276-107,994,7367,994,8070072
TCTGAAGCTGTTGTTAATGCTGGACCTGCAGTTTTCATATCCCCTTCTGGTCCGAATCCT
CTCATGGTTCAG                                                
 Intron 10-117,994,8087,994,89083
gcaatgttctaacagcctttttgaa..........tgctgatttatctgtatttgttcag
11EOY31276-117,994,8917,995,02001130
GCTCTTCCTTTTCAACCAGGAACTAGCTTTGGTGCCTTTCCCATGGGAACTGTACAGCCT
GGATCTGGTTTGGTTAATGGACTTGGGACAGGGCTTCTTCCTAGGCGTATTGATATACAA
ATAAGAAGAG                                                  
 Intron 11-127,995,0217,995,10080
gtatgctatacctggctattttctc..........acactgatgttgtatttacaataag
12EOY31276-127,995,1017,995,52311423
GTTCATCGGTGGCAACACCCAATGTTAATCGAGAGGAACGTGGTGATACTGCACAACAAT
CAGGCCAAAGGAACCCATCAATGGGTTCTGGCAGTGAGAATCGTAGCACTCAAACAAGTT
CAAGGGTCTCAGATACTCCATCTTTTGCTGGGGAATCAGGAGTGCGGGTAGTGCCAATTA
GGACCATGGTTGCGGCTGTACCCACTCCCTTTGGTCGCTTACCGTCAGATTCTTCTGGTA
ATTCTGTGGGATTATACTACCCATTCCTTGGAAGATTCCAGCACATTGCTTCCGGACATG
TTAGTGGGGAACGGGGATCTCAGGGATCTGGTGAGAATCTCTCCCATGGTGTTCAATCTG
AGCAGCACCTTATTCCTGAATCTACAGCGCAACAACAAAGTTTCGAAGAGTCAACTAGAG
ATG                                                         
 Intron 12-137,995,5247,996,056533
gtaatatgataaatccagcacttca..........actgtcaaattgcttcttgttggag
13EOY31276-137,996,0577,996,43310377
GTTCATTGCCAAATCCTAATTCAAGACAACAGGAGCGATCCAATACTCGCAGTGTCAGTA
TAAACATTCTAGCAGCTGGCCGGACTCAAAACAACCAAGACTCAGAGAGACAAATTCCTA
GTAGTGTTCAGTTTCTGAGGGCAATTTTCCCTGGTGGTGAAATCAATGTAGAGGAAGCAA
GTGTACAAGGAGCAGCTACAGGTTCTGTCCAAGAGCAAGCAGGGACTTCCAGTGGTGCTC
CAGCGGCTGAGCCAAGTATTACTGATCAAGGGGTGTTTTTATCTAATTTGCTTCATCAGA
TCATGCCATACGTACCTCAGCAAGCAAGTTCACAACAAAGTACTGTGCCTACAGAGGAAG
CAAATACTTCCACCCAG                                           
 Intron 13-147,996,4347,996,735302
gtaagcatgcttgccattcttagtt..........aagatgctaaatgctgctgtatttt
14EOY31280-147,996,7367,996,8160081
CAGGCTGAGCACACTAGTCCTGGGAGTTCACGTAGACCAAGTGACTCTGAACCAAATTCA
CCAAACTCAAAACGTCAGAAG                                       
 Intron 14-157,996,8177,997,738922
gtactggttctgaatacttttgtta..........gaaatgaaatggctttttgttgcag
15EOY31280-157,997,7397,998,744011,006
ACAGAGTAGCTTGTCAAGAGAATGAGGATTTGACTAGCTTCCCATGGTTATAAAAGGAAA
TCGCTTTTTGTTGCAGAGAGAGTAGCTTATGAAGAGAGGGAGGATTTAACTAGGCTTCCC
ATGGTTATGAAATGAAATGGCGTCTTGTTGCAAGACAAAGTAACTTATCAAAAGATGGAG
GATTTAACTAAGCTTCCCATGGTTGTGAAATTTGTGATTGCTGATTTGAGCACTTGTTGG
CACGAAAAGCGGCATGACTTTTATGTTAAATGTGGTATACCATGTTTGTTGTATTTCAAA
TATGGCATTTGATAATTAGTATAGGGAAATATGTTGTCACAGTTTTTGGTCTTTTGACTT
GTACAATATAGTAATATGTTTTGCATGGGGTTTTACTGGATTTTTCCATGTGTAGCCCCA
TCCATCATCTAGCTTCTCTTGAGCGTCTGTGGCTTTTGATTCCCGATTTTATTTTTGTAC
ATCCAAATTGCATCATGGTTGCATGGAAGAATTCTGCAAGGGCAAGCTACTGCATTGGCG
GATGTTATGGGAACATTTTGCTTTAACCATTTACATCTTCAGCAACTACAATGCAAACCA
TGAAGCGAACCTCTTACTCTCATGCTTTATTTATGGTTTGAAATAATGTAAGAGCGTTCA
ATTCTAATGCTAAGCCATCTTTTCTTGGCTCGAGTCACGAGTTGTGGCCATGTGGTTGGT
TAAGTGATAGCTATTGTTTTTTAGCAAACCTTACGTAATTATCCTTTGAACATATTGCTA
GTAATTTGTACAGAAAGTACACATGTTCGAATTAAACGACCTTCTATATATTTAAATTTA
AAACCCGAGGGCAAGAGTTTGATCCATTTATGAAGAAGAGAAGATTATTATTATGCACGT
GATCGTAACTGCACAATTAACTTAAGGATGCTTGTGTATATACTCAACAAGGTAGTCAGG
CATTTCTGTAAATAGCTTAATAAGGGTGAGGTTAGTTTTGTAAATA              
3' downstream sequence
aacaacaagttatttacttactttggcagccgtaaataaatctgcatttt..........