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Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

Ubiquitin carboxyl-terminal hydrolase 19, putative isoform 1

Location
About this transcript

This transcript has 11 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene TCM_036844 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-EOY292523889727aa
 
Protein coding
A0A061GJD3 Ensembl Canonical
-EOY292513170727aa
 
Protein coding
A0A061GJD3 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gatcagagggccatgtagagtgctataaaaagagccattcttaaggctaa
1EOY29252-1499,487497,618021,870
AGAGGGAAGATATGGGAAGAGAAAGATATGGAAAGAACAGCTTTTCAGAAATATAGAAAA
AAGTGAGGGATTTGGTCTACACAAAAAAAGAAAAGGGAGAAGAGTAGTGAAAGATTTTCT
TGGGAGCTGTATCATCCACATCAGCCTAACTTTCTCACACTAGTTTCATTTCTCTCTTCT
TTGCTGTAGAAATGAATATTTTTCTGAATAAATTGGGTTTTATATTAAATATGTTTAACT
AGAATTTTTGATCTAGGATTATGGCGGATTTTAATATGTAGCTTGGATATTGTGTTAGTT
TATTGCTTATTTTCTATAAAAATATTCATATTTACTCAAATTAGAGTTTATTCCCCATTT
ATTTGCTTGATCACCATTTAAATGTGTTTAGGTATTTAGATGACACTTGAGAGTTAGTCT
AAATTAGACTTTGATTTGGGTAATGTATATTCATTACACTTAGAAAGGAATTTTAGTGTT
TTGATGTGCAATTAGAGTAGACATACATTTAATTGCCACATATAGTCAATTTTTAAAATC
TTGGCTTAAAGAATTTAATGTAGTTGTTTCCTATAAACATATAGTGATTCAATTAGGTTA
AGCAAGTGTGTACTATATTGACGGAGAATTACACATACTTTAAGATTATAGACTAACATC
GACTTTTATTGAGATTAAGTAATTAAGCAAACACAATTTCAAGTGAAATATTAAAGGATA
CTATAATCCTAGACTGTTAGACCATTACTTCTACCTCAATTTGTTCTTTGCACCTCTTAG
ATTAAAGTTAATTAATTACATTACATTTTAATCATTGTTTAAAATTTGATATTTAGATAA
AATTAGCTTCTTTTAATTTTAGTAATTAGCAACAACAATTAAATCAACTCTTCGAGAAAT
CGACAAACTCAATTTATCACTATATTACTTATTACGATCGTGTGCCCTTACACCTAATTT
TTGCTTATATTTTACATTTAATTTAAAACACATCTCATAGTACATAATCAAAAGATAATT
TACACAACATATCCTGACTCATATTCAATAACTTAAATCATGAGTTTTTCACTGTATATT
TACAAATTATTGACAAAAAAAAGCCATTGGATGGAGTGAAGCTAAGTTCGAAACTCGTGA
CTGGCAATAATAATTCTTGAGTACCTTTAGTAACACTAGTTGTAATAGTTAAACTAGTAA
AGAAAGGTATCTTTATCCCACTTTAAAGGCGTAAGCCTTAAGAAGCGAAGGGCCCAACTG
CCCCGAGGGCCGAGAGCTTGAAAGCGGTGTGGAACCTGCATCTGCCTGTGTAAGTAAACA
GGGGCAAAAGGCCTTATTTCTTTTCAAGTAAGAAATCAAAAAATTCCTCTGCGTAACCGA
AAGCCCTCACGCTACCTGGCTTCCTCCTTTCTAACGTGTTACACAAGTAGTAGGAAAAGG
TGAAGCCTTGGCTAATTTTGAATCTTGGGTGTTTGAGAGTAAGAGTAATTAATAGTTTTA
TAAAAAAGAGGTTGATAAATTGGGTGAGGGTGGGGGGAAAAGTGTGGTTGGGAGAGTGGA
GGCGAAGAGGAAAAAAATCGATGAAGAAAAACCCTAGGATCGGGATCGAGGAGGCCGTGT
AGATGCATGTCGGGGGAATAACGGTGGATCTAAATTGGTTCCTGCAATTCATATTTACGC
TTTTTATATTCGCATTGGGGGCTCTCCACTTGCTCAAGAACACGGCGTCGAAGTACTTCG
AAGTCGACGCCAATTTCGATCGTGACCAAACAGTGCCTTCAATGCCCATGGACCCAGACC
TCTCCCCTTGCGCCGTTTGCTCTAATCCCGCCTCCAAGAAGTGCTCTCGTTGCAAATCTG
TTCGTTATTG                                                  
 Intron 1-2497,617496,782836
gtaaaagcttttctttttattttgt..........ttattacatttgctctctttttcag
2EOY29252-2496,781496,63120151
CTCCTCGGCTTGCCAACAGGTGCACTGGAAGGCTGGGCATAAGACAGAGTGCAAAGTAAA
GTCAGCACAGACTGCAAGCACAAAACCATTTTTAGGAGTTGCTCTCGTTCCTGCCAGTGG
AACCTCTAAGGTTATCAAAAAGCCAAGAAAG                             
 Intron 2-3496,630496,56269
gtgaatcttttgacccttttcaaaa..........aactcatgttccatttttctttcag
3EOY29252-3496,561496,4730289
GTTCTTTTTCCATATGATGAATTTGTAAAACTTTTTAACTGGGAGAAACCAGGATTCCCT
CCATGTGGACTCTTAAATTGTGGAAACAG                               
 Intron 3-4496,472496,353120
gttcatgtttaccacactcatttct..........ttttctgttttttctttttctgcag
4EOY29252-4496,352496,2672186
CTGCTTTGCCAATGTGGTTCTGCAATGCCTTGTATCCACTCGACCACTTGTTGCTTACTT
GTTGGAGAAAGGCCATCGGAAAGAAT                                  
 Intron 4-5496,266496,18285
gtaaattgagaaactagaactgata..........tatggttgtcatttctattttctag
5EOY29252-5496,181496,01912163
GCAGACGTAATGATTGGTGCTTTATGTGCGAATTTCAAACTCATGTCGAAAGATCAAGCC
AAAGTCTGCATCCTTTTTCACCAATTAACATTCTCTCACGGTTGCCTAATATTGGAGGTA
ATCTTGGTTATGGAAGACAGGAGGATGCACATGAATTCATGAG                 
 Intron 5-6496,018495,908111
gtagtatcacttgtatttaattgca..........taattattcattgtcttttttgcag
6EOY29252-6495,907495,78420124
GTTTGCTATTGATACAATGCAATCAGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGT
TGATCCTAGCTCTCAAGAGACAACCCTTATTCAGCATATATTTGGTGGTCATCTACAGTC
TCAG                                                        
 Intron 6-7495,783495,415369
gtgatgtatgctattggtgtagaac..........ttatgatcttgttaaaaccttttag
7EOY29252-7495,414495,25702158
GTGTTTTGTACAAATTGCGATAAGATTTCAAGTCAATATGAAAATATGATGGATTTAACT
GTTGAAATTCATGGAGATGCTTCATCGTTGGAGGAATGCCTTGATCAGTTTACTGTTAAA
GAGTGGCTTCATGGAGATAATATGTACAAATGTGATGG                      
 Intron 7-8495,256495,125132
gtatgattgcttctccttcacttgg..........tgtggtgttttattcctcttttcag
8EOY29252-8495,124495,0402085
CTGCAATGACTATGTCAAGGCATGGAAGCGCCTTAGTGTACGATGGGCTCCTAATGTTCT
TACTATTGCCTTAAAAAGATTTCAG                                   
 Intron 8-9495,039494,748292
gtcttaattacatccataaaccata..........taatatctgttgaaaatctctgcag
9EOY29252-9494,747494,53500213
AGTGGCCGGTTTGGGAAACTCAACAAAAGAGTTAGCTTTCCTGAGACCTTAGATCTTACC
CCTTATATGAGTGAAGATGGAGATGATTCCAATGTGTACAAACTTTATGCAGTTGTTGTC
CATTTGGATATGCTGAACGCATCCTTTTTTGGTCATTACATCTGCTACATAAAAGATTTC
TGTGGAAACTGGTATAGAATTGATGACTGTAAG                           
 Intron 9-10494,534494,289246
gtattctttctctctctctctctct..........taacctgttctgcaactttttccag
10EOY29252-10494,288494,2270262
GTTACAAGGGTTGAATCGGAAGAGGTACTTTCTCAGGGAGCTTATATGCTGTTATATAGC
AG                                                          
 Intron 10-11494,226493,573654
gtgcacttttcccccctcaactagt..........atgctgttttactgtttctgttcag
11EOY29252-11493,572492,68522888
GGTTTCTGCACGCCCATCATGTCTTAGAACCTCTGGAACTCAAAGGATGGATGAACAGAA
GCCAATGAAAGCTGAACTAGAGCATTGTCCAAAGGAACAAATTGAATGTGTACCTGGAAA
AGATTCTGTTAATTCTCGTAATCATTCTGCTTCCCTGTCACTAAATGGTAGTTTGCATTC
AGAAATTCCGAGACATGGAGTTGAGTCATCTACTGGAATGAATGGTGATGCTTTTCATGG
ACGCAAGGATGGTGATGTGGTTAAGTCAAATTCATCTCTGTCTAAGGAGGTTTCCATCTG
TTCAAATGAGTCACCTTTCCAGATTGATTCAAAAGGCAGTAGAGTAAATGGTGCAGATAT
GGATAGGGTTGATTCTACAACAGTGAGAGAAAATCCGGAGAATATGGACACAAATAGTGC
TCAGCCATGTTCTGATACGAAGAAGGTTCCCAGCTGTGATAAAGATCTGGTTGTTGCAGC
CAGTTCTGAAGCTGTAAGAGAACACCCAGAAAGTACAAAGATGGTTGAAATGGAGCAATA
TTTATCAGTTACAAGAGAAATAAAAAGCTGTGAGCAAGATTCGCAAGTAACAATTGATTA
TGTAATGGAAGACTCAGAAGACATCAGTATGGCCGATTCTAAACCAAGTGCATCAATTGC
AGGGGATAGCAGCAGCAATTTTTCATTTTCAGATGATACATCTCCAGCCACCAGAACCTC
TGGTGTGAAACGTGAATTATCCTTGCAACACGAGCGAGGGAATGGGATCAAGAGAGCTGA
AATAGCAGATGGCAGTCAGCAATAATTGGCTGCATTCTCTCGCTAATTATTTTGTTCATA
ATTTTTTTAATCATCCCATCATCGAAAGAATAGAATGAGTTGGGTGTC            
3' downstream sequence
tttatctggggcttcattatttacagaaatctcagattctattgtaccaa..........