Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

F-box and associated interaction domains-containing protein, putative isoform 1

Location
About this transcript

This transcript has 1 exon and is annotated with 14 domains and features.

Gene

This transcript is a product of gene TCM_031361 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
-EOY128493175398aa
 
Protein coding
A0A061F7J2 -Ensembl Canonical
-EOY128503175398aa
 
Protein coding
A0A061F7J2 --
-EOY128482961398aa
 
Protein coding
A0A061F7J2 --
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tggcgttggtgcaccgaccacgcccacctttttatccaaattactttggt
1EOY12848-14,403,6054,406,565022,961
CGTCTGGCACTATTGGGTTTTGGTTAATCTTTTATCATTTATGGTTCTGTGTTGTGTGTT
TCTCTTTGGTTTAGCACAGGAAAGAAAAACCAATGTTTTCATTTGTTGTTTCTTCCTTTC
TTTTCTTCCACAGAAACATTCCTTCCATCAACGGCCAGTAAATACAGTGTGTCCAATATC
TGGCCGTCAGGATATGTGGTTTGTTTTGGGGTTTTTCCTGCTTTCTAGTAAATCTGATCT
CATGGAGAAATGTAAAAGTTTTAGGTGAGAAGAAAAATAAATTCTTAAAATATTATGGTA
TGAGTGAGAAAGCAACAACTTCAATGGGCCAATAATAGCTCTTTGGAAGAGCAAAGCAAG
CTTCATGTAGTCAGTCCCAATGCTTTTCTTTCTTCTCTACTAAGAGGTCTAGCTTTTTTA
GCCACTTCTGAAGTTCCACTCTTCCCCCCTTCTCTTATCCATATATACATTTCATTACAT
CAAAAAGCGACTGAGGAAAAACAAGATGTCTGACTATTTGCCACAAGAAGTCATCCTGGA
AATCCTTAGAAGACTCCCTGTCAAGTCCCTGGTGAAATGCAGATCAGTTTGCAAAGCCTG
GAACAGCCTCATCAAGAGCCCATCTTTCATCTCGAGCCATTTACAAACAGCACTTTCGAA
ACCCAACGATCACCTCCTCCTTCTCAGGCTTTTCGAGAATGACAAAGAAAGCTACTTTTT
ACATTTTGACAATGATGACTTTGATGAGTACAAGCAGCTTCACTTCCCTTTCAAGAGTAA
TTCGCCTTGGTTTAGATTGGTTGGTTCATGTAATGGGTTAGTTTGTCTTCAAGATGGCTT
TTTCCCACTAGATTCTGTTGAATTAATTCTATGGAATCCTTCCATTCAAAAGTACATTAC
TTTGCCCAAGCCCGGTGTCACCTGCTTGAGTGGGAGGGCTTATAATTCAACTTTAGGATT
TGGGTTTGATTCAAGAACCAATGATTACAAGCTACTTAACGTTGTGAGCATGTCAGTTGG
CGAGGAAGCTGAAACTTTGACTGAAGTGTATTTGTTTTCACTTGATGGAAATTCTTGGAA
GAGGGTTACTGCTATTTCTCCCAAGTATGGTATTGAAGGGCATGAGTTCTCGGCCTTTGT
GAATGGGGCTGTGCATTGGCTGGGATATCAGAGAGGAAAGGATGGTGGATTCAGGAATAT
GGTTTTGGGTTTTGATATAAGCACTGAGAAATTTAATGTGATAAGGTTGCCAGAGAGTTT
AGTTGATTTGTGTCCTATGGATTTGTCCATTATGAAATATGAGGAATCTTCCATTGCAGT
GCTTAAGAGAGATTGGGAAGATGGTGAGCAGCTTGACATGTGGGTCATGAAGGAGTATGG
TGTAAATGAGTCATGGACTAAGGTGTTACATTTGACTGACCAAAGTGGAGAGTCACTACC
AAGGGTATTGGGGTTTAGGAAGAATAGGGAAGTTTTATTGGAAGTGGATGGTGGAGAGCT
GGCTTCACTGGATTTGAACTGCCGACAAATGGAGAATCTTGGAATTGAGGCAGAGGCAGG
GTTTTTATTTGTTGGTAGTTATGTGGAGAGCATGGCATTACTTGACAAAGGGATAGATAC
TGGCAGTCTGAATGATGCAAATCATGTTAATGATTCAAGTGATTCTGATGCATCTAGTGA
GGGAGAAAGTGAAATGACATAGGATTGGTAAGTGCACCACCTGTTATTTTCTTTGCTGAC
TTGTAATTAATACGTATGGGCTTGAGATTTATTTCAGTTTGGCTTTCTATGAATGTCAAA
TTCAAGCTTGCATATATAATTTTTGTGCATAACCTCGATTCTATTAGCTTAATGGGCTAA
AGGTTTGATACAAGAGATAATCCATTAATACTTTAAGGAGATTAATAATGGCATTGGCCA
TGGAGATCAAGCATGAGTGAAAGGCTCTAAAAACAAGGAAAACTCTATTCATTGGATCTG
CTTTTTCTAGCATCTTATTAATAGGTTATAGAGAACAATTTCTGATATTTTGTTGGGAAT
CCTTTTGAGTAGGCTGTATAACTTTGTGTTCTTGTAGCATCTGTGCTTGATATGTTCCTG
CTGTTACATATATTGAAGTCAGTTGATCTATAAGATGTTGCATAGTTGTTATGCTGGTGG
ATTTTCTTGTCTGTTACCAATTGCCTAAAGAATAGTAACACATATTCTGAAATAAATTTC
CTCTGTAGTTGTGTCATATACCTTGGGTGAATATGCATTAAGAAAGTAGGATGTCTTAGT
GGTTTATAGGAGGTAAAAGCAAACTATTGATAAAAAACAGAAAGTCCATAGATCAGGAAA
AGCTGCCTCGGATTTTCAATAATTATAATCCATAGCTCATCTTAAAGATCAAAACTACAT
TTGGATCAGTTTGCCTTTGTCAGCTAAAGTCGTGATGCTTCTCTATCTCACACAAGAACA
ATTGTACATGTAAGCATGCTCATATCAACAAATTCAGGCATGTCTATTCTTTGAAGATCA
AATATTATAATCCCCTTGTTTGTTTCATGTAGTAAGGTTCTGTTGTACTTATTTTCTCAT
GTGAGTAGTAAACCAAGACGCTATGTTTGTTTCTGATTGCACAATTTCTGCAATGCTATG
TCTCTTTATCTTTTGAATAACATATTGCTGAATTCTTGCAGGGCCATAAGGAACCATGTG
GATATGTGTGCCACTAAAGCATAAAGCTGTCTTTCTTGTGCAGCTGCAGACCTTCTATAT
GGTGTTGCATTTTGTCAGTCTGCACTGCATGTTTTTGTTTAGTTAGAATAGGCTCATAGT
TATACTGAATCACCCTTAGGCTGTTTTTGTACTGGCATTAACAATATATGCCATGTGAAA
AGTTGGCCTTGCTAATCCCGAACAGTCTAATTGTAGTACTTTTAGCATTCTTAGAATTTG
AATTAAAGAGGAAATTTGGTG                                       
3' downstream sequence
tgtgtttggttatattttaatcatgttgtgtgaatgcaaggaaagcacat..........