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    Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼

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    Transcript: EOY07806

    Description

    Binding protein, putative isoform 1

    Location

    Chromosome 5: 2,779,286-2,784,172 reverse strand.

    About this transcript

    This transcript has 6 exons and is annotated with 19 domains and features.

    Gene

    This transcript is a product of gene TCM_022132 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -EOY078042494523aa
     
    Protein coding
    		A0A061EZX3 -Ensembl Canonical
    -EOY078063118496aa
     
    Protein coding
    		A0A061ESK0 --
    -EOY078053053419aa
     
    Protein coding
    		A0A061ES01 --
    -EOY078082089461aa
     
    Protein coding
    		A0A061ET33 --
    -EOY078091631380aa
     
    Protein coding
    		A0A061EZX8 --
    -EOY078071161386aa
     
    Protein coding
    		A0A061ETS9 --

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........caagaggcagaatggtgaaggaaccagcaacaacagcaacaacaacaaca
    1EOY07805-12,784,1722,782,620001,553 
    CTCTTGATCCTCCACCACTTCAGAGGGTACTCTTTTAAAGCTTTGCTTTTTCTTTCAGTT
TTTGTGGCTTGTCTGCTTGTTAAAATCATAGCTTCTTTTGGTCAATTTTCAAACTTTAGC
TGTTTATTGCTCAAATGATTGCTGGGTATTCGTTCTTGCTTAAAGATGATGAATTTCTTC
TCCTGTTTCCTCCATCCCTTTCTTTAGCTTTGATATTTTTTTATCTATTCTGATTGAAAA
AGCTACTTTTTAAGACATAACATTTAGGGTATCTCTGTTTTTACTGTTGAAAGAGAAATT
TTAAAGAATTAGATGTTCAACCTTGAGCTTTCTAAGATCACTTACCTGAACTTTATGGAC
TTCCTTTTTTTTTTCTTCCTTTCAAGCACAAAAAATGTTTGCTTTATGCGGCTTCTAGAT
AAAATTCTTTCAGGAAGTAAGCTCTTCTGCACTACTTTATACTGGGTAGGAATTGACTTC
TTCTCTGGTTGAAAAACTTACTCAATTCTATATTCTGAGCCTTTGCTAGGACAAGGCCTC
TGCTGCAGTGTGCTAATTTCAAAAAAGTCTACTTGCAAGGCAGACATAGGTTATCTGGAA
TGGTCACAAATAGTACAGCAAAGAAGCAATCATACCAGATTTTTCTTTTTCTTTTTGAAG
CCTTTTAAGCACAAATCTAAACTAAAATTAATCCTTGTTTGAAACTTGCAGTTCGCCAAC
TTTTTGTCATAACAAATGAGAATGGACTGCCTAATTCTTTTTCTTCCCTATTACACTCTA
TTTAGGGTCCCATTTTCTGTCAAATCATATTGCATCTTGTCTTGCCTTGCTACTTAAACA
ATAGCCTATTCAGCTCCTGCTCACCCTTGTGATTCTGTGAAGACATAAGCGCAGATAACT
GTATTTTATTAAAGGCTAATGCTTTGAATTCGTTTGTTATTTGTCAGTTGATTGGACTTG
GTAAGTTTTTGTAACACTATAGAAGCTAAGCTGCGTGCTATAGGAAGATTGATTGATTAA
AAAGCTCATCTTTTGTTTTACACATGATCAATGGGAGAATTTTTTCTTTTCAATCACAGT
TTGGAGATTCAACCGAAATAATTGAAGAGATGCCACTTGGTCAGCACCGAAAGCCGGATG
ACCTTGTCTTAGAGATACCACCAAGAACACTGGAGGATGCCAGGGAGGATTTTGTGAGAA
TAGACATGGCCTTAACACCGACTGCTACTCCTAAAAGAGTTAACTTTTCACCCATGCCTA
GCCCTATTTTTTCCAGATTTGATGACTCCCCAGTCCACTCATCATTTAAAAATAAATCAG
CCTTAAAAAGCCTCCTTCCGAAGCTAAGTTTCAAATCTCGCAACACTAATTTGGAGATTG
AGAAGGCTGCCATCTTAGCACTGGGAGGCTCATCAGCAGAGATACGAGGGAAGCCTCGCA
TTTCAAGGACATTTTCCCTCTCAAAGCTTTTCACACCAAGAATGAAGAATACATCATCCT
TACCTGTTACTCCAACTACTCACTCAAACCCAGAGTCCATGCATGGTGGGCAG
     Intron 1-22,782,6192,781,941679 
    gtaattagcttactaagttctgcag..........tcttacagaattgctcactttacag
    2EOY07805-22,781,9402,781,76301178 
    AAAGGAGGGGCCGGACCACCCATTCATCGTTCACATTCAGTTCCTGTGCTCAACAAAGAT
GGAAGCATAACACAGTTGGATTCTTTAGGAGGTGTATTTCGTGTAATTCCTACAACTCCA
CGAGCAGTCAAGGGAACCATCCTGACAACACCAAACACATTTACCAAAATTGATAATG
     Intron 2-32,781,7622,781,127636 
    gtaattttaatctgcagattgccta..........gtcatatcttagtcttattgttcag
    3EOY07805-32,781,1262,780,82912298 
    ATGGAAATAATGATGGTGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATCTGCT
TGACTGAGCTGGGGGAAGGTGCTGACACGCTCAAGATGGAATGTAGCTGCAAAGGTGAAC
TTGCCCTTGCCCACCAAGACTGTGCCATAAAGTGGTTTAGCATCAAAGGTAACAAAACAT
GTGATGTGTGCAAGCAAGAGGTTCAAAACCTACCTGTTACTCTTTTACGAGTTCAAAATG
ACCAGGCTCATAATTTGAGAGGAAGTGGGCCACGACAAATTGAGGCTGCTCGATACAG
     Intron 3-42,780,8282,780,608221 
    gcaagtatacacagcccacctgatg..........cttaacataacggtattttggacag
    4EOY07806-42,780,6072,780,36921239 
    GGTCTGGCAGGATGTTCCCATTCTTGTCATTGTTAGCATGCTTGCTTACTTTTGTTTTCT
TGAGCAGCTGCTGGTAAGTTTAGCAATTTGGAAATGCTTTCCTTCCTTTTCAAGCTTTTT
ATTGTTCTTAAAGTTATTATGTACTCAGGTTTCAAAAATGAAGTCTGGCGCAATTGCCAT
CTCTCTTCCTTTTTCCTGTATATTGGGTCTCCTTGCTTCCATGACATCAACAACTATGG
     Intron 4-52,780,3682,780,27396 
    gtgggattaagttcgttgcaaaatt..........aactgactccaacttttgttttcag
    5EOY07804-72,780,2722,780,1931080 
    TGAGGAGAAAATATGTCTGGATTTATGCTACAGTGCAATTTGGACTTGTGGTTCTTTCTG
CTCATCTTTTCTACTCATTG
     Intron 5-62,780,1922,780,056137 
    gtaagagagatactctttatcatag..........atcctatgtttcttgtgatctacag
    6EOY07808-62,780,0552,779,28602770 
    CTCCACATACAGGCTGTTCTTTCTGTTCTGCTTTCTGCATTTGTTGGGTTTGGCGGAACA
ATGTGTGGAACCTCTATTCTTTATGAGGTTTCAAGGGGATGGAGAAGGTGGCGTGCTGAG
TCAAATCAACAACTTGGTTCTCAAGAGGTTCCACAGCCAGATCAACCATCCGTAACCATG
CAACAGATTCAGACAGATACTCACCCTAATGAAACTGAAAGGAGGGCTTCAGAAAGTGGG
AATGGCAATTGAGTTAGTCTATCTGTAAGATGTATAAATGGTAGGAAATGCAAAGCTTTC
GGCTGTACAGAAACTGTCTCAGTTGTAGAGATGCTTTTTACATGCTTGTTTATTGTTGGT
TTTATCATCACCTCGCAGGGAAAAGCTTTTTTCTTCTTTATCTTTTCTTTCTCTTTTTTT
TTTTTTGTTATTTCAGTTCCACCCTATAAGCTGTAATAATGCTGCAATTTCTGTAAATCA
TTTCACGGCTCAACGAAGAGAGAAAATGACATTGACATCAATAAAAGATAAAGATACACC
AAAATCTCTTCCTGAATCTCAATATTCCAACCACCCCATGGATGATAACAGGTTCAGGGG
TTGTTTGCCTCTCAGCCTTTAATAAAACAAGCAGAAGTTACATGGTGAATATTTCGGCCA
GGAACCAGTTGGAGAAAGCCTTGGATCTTTGTCTATGGGCTTTCCATTCATTCAACTTAC
CTCAACAAGTGTAGTGAGGGATGAGAAAGGACAAATGGAAAAGGGCTTTA
    3' downstream sequence 
    gtgtagtggaaggattttacttgttttgcagccttgcaggaggttttttc..........

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