Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Uncharacterized protein isoform 1
Chromosome 3: 31,519,494-31,528,658 forward strand.
This transcript has 12 exons and is annotated with 16 domains and features.
This transcript is a product of gene TCM_016149 Show transcript tableHide transcript table
.
| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........taataaataagtctgatataaatattgtcttttatttttgaacattttaa
| ||||||
| 1 | EOY24584-1 | 31,519,494 | 31,520,071 | 0 | 1 | 578 |
TTTTAAAATTATAATAATGCATAATGCCTGTGAAATTTTAGTTATGGATTTTTATTACAA GATAAAATGAAATTATGGTTTCGTTATGTAAAAATAAACAAAAGGGGAAAAAGGAAAAAA CATTGGTGTTGCCGTCGAAATAAAGGCGGCCCTTAATAATCGTTCACTTTCCATTTCCTC CACGGCCTTTTGTGATCTCTCTTCGTAAGTTTAAAACTCTCTAGCAAAGCTAGTCGTTTT AGTGCCAAAAAAGAAGCAAAGTTTCCTTTCCTTCTTTTCATTTTTAGTAAACAATATTTT CCGTGATCGAGTTCGTCTCGGAAGCAAAAGCAGATTGAAAATGTCCGCTGCTGCAGCTCC TCATCCTGATGCGCCTGCAGCTTCTTCTTCTTCGCCTTCTCCTTCTTCTGTATCTGAATC GAAGGAAGAAGCGGTGAAAGATGAACAGAATCAAGAACAAGAAAAGCAAGAAGATATTAA AGAGTGCATGCACAAGACTAAGACAATCCAGTTCTTAGGTCGTACCACGCCTATCATTCT CCAAAACGACAATGGACCTTGCCCTCTCCTCGCCATCT |
| Intron 1-2 | 31,520,072 | 31,520,548 | 477 |
gtaactcctctctttccatttctag..........gaacattttttgggggctgtgacag
| |||
| 2 | EOY24587-2 | 31,520,549 | 31,520,667 | 1 | 0 | 119 |
GTAATATTCTCCTTTTAAGGAACAATTTGAACCTGAGTCCTGAAATATCCGAAGTTTCGC AGGAGAAATTGCTTTCACTGGTGGCCGAGCGCCTCATTGATTCCAACAGTAATGTCAAT |
| Intron 2-3 | 31,520,668 | 31,520,752 | 85 |
gtaatttctttccttttatatgctt..........actgatgaatccttttggcatgtag
| |||
| 3 | EOY24587-3 | 31,520,753 | 31,520,859 | 0 | 2 | 107 |
AATAAAGATGCAGGATATGTTGAGAATCAACAGCAGAATATTGCGGATGCAATTGATTTA CTCCCTTGCCTTGCAACCGGGATTGATGTAAATATAAAATTCAGGAG |
| Intron 3-4 | 31,520,860 | 31,520,949 | 90 |
gttggctttttcctttctttctctc..........gttgaattatgtgtttgacttgcag
| |||
| 4 | EOY24587-4 | 31,520,950 | 31,521,037 | 2 | 0 | 88 |
AATAGATGATTTTGAGTTCACTCCTGAGTGTGCCATATTTGACCTGCTTGATATTCCCCT TTATCATGGTTGGATTGTTGATCCTCAG |
| Intron 4-5 | 31,521,038 | 31,522,599 | 1,562 |
gtatgttgtttttcagccacatata..........tattctcacggtgaacgtttaccag
| |||
| 5 | EOY24584-5 | 31,522,600 | 31,523,674 | 0 | 1 | 1,075 |
GACTATGAAACTGCTAGTGCCATTGGGTCAAAATCATATAATGCAATTATGGGAGAGCTT GTTGCATTGGAAACACGAAATATGGAGGTTTCACGTAAAAATAATTCTGAAGATTGTGTG GATTTTGCTGCTGCAACAACTGCCACTCTAGGAGTTCCGTCTCCTAGCCTGTCAAAAACC AGATCTTTTGATGATTCTCCTTGTTCTGCATCTGATCAGCAAAGATTAAGAAAAGGAGAT CTTGAGGAGGAAGCAGAGTTATTGAGAGCCTTGAAATTATCAGAGGCTGAATTGCCAACC TCAGTTGGTGATCCTGGCAGTTTAGATGAAAGATCATGTTTAAAGAACCTTGTTTCTGTA GACTCTGTAGATACACCAGAGGGGGACAAAGGTGTTGAAGATCAAAACTTGCATTGGCAT GAACCATTTTTTTCAGATAATTGCAATGCCTTGAGCAATGATAGTGGTAGTAAGACATTT TTTGAGACCATCACAAGGGAAGTGTTCTCAAAGACTGATGGGGTTAATCAGAATCAATCA TCGTATGTTATATCTGGAGAACCTACCCTTTCTAATGATGTGGTTGAGAAGAGCAGTGTT GAGACTACGGTTGTTAAGTGGAGTAGTGCTGATGAATTAAGCCAGATTGAAGGTGCGGTT CCAGTTTCACTGGCAAAGGATACTGCATGTATAGATGGAAACAACACTGAAATTTCACCA GGGGGTGAAAAGATTGAGACTCAATCCACTTCTGCAACTGATGCTCAAAAAATTCCAGAT AATGTGAACGGATGTGACATGACAGAAGTATCATCCGTGTCTATACAAAATGCCGATTCT GATTCATCTAGTGGAAGAATACATCATGCAGATGTGCCAGAAGCTTTTACTTCTAGTCTT GATGGAAGTGAACCTATATATGAAGGAGAAGAATGCATATTAGATTCAGTAACAACAACA TATGAAGACCGGGAGCCTATATATGAAGGTGAGGTGATTCTTGCAGAACAAGCTGACAAA AAAGCTGTAGAGGGCTGCAATGTGAGGTCTAAAGATGAAATTACTCCACAACAAG |
| Intron 5-6 | 31,523,675 | 31,523,955 | 281 |
gttagtggtgcaccttatagaaaat..........cattcatcttctcaatgctcttcag
| |||
| 6 | EOY24584-6 | 31,523,956 | 31,524,010 | 1 | 2 | 55 |
GGGAACTGATTGCAAACTTCTTGAAGAACAATGCTAGTCAATTGACCTTTTATGG
|
| Intron 6-7 | 31,524,011 | 31,524,127 | 117 |
gtatgttgagtagctgtttagatgt..........tagtgactatttatatattttgcag
| |||
| 7 | EOY24584-7 | 31,524,128 | 31,524,209 | 2 | 0 | 82 |
GCTTTTTTGCTTACAAGATGGTCTTAAAGAACGTGAGCTTTGTGTTTTCTTTCGTAATAA TCATTTCAGCACCATGTTTAAG |
| Intron 7-8 | 31,524,210 | 31,524,389 | 180 |
gttaggagctggaaccacttctttc..........ttattgaatctcattttatttgcag
| |||
| 8 | EOY24584-8 | 31,524,390 | 31,524,470 | 0 | 0 | 81 |
TATGACGGTGAACTCTATCTACTAGCTACTGACCAAGGCTATCTAAATCAGCCTGATTTG GTTTGGGAGAAGCTAAATGAG |
| Intron 8-9 | 31,524,471 | 31,525,255 | 785 |
gtaaaattgttacctaccaatcttc..........aaaatttaactccccatgctttcag
| |||
| 9 | EOY24584-9 | 31,525,256 | 31,525,360 | 0 | 0 | 105 |
GTCAATGGAGACACACTGTTTATGACTGGTAACTTCAAGGAATTCAAGGTGGATAGTCAT GCCAGTGGCACTTGGGATGAACAAAATGCGATGGCTAGTACTGCT |
| Intron 9-10 | 31,525,361 | 31,525,444 | 84 |
gtatgtgtttccttttggcaagaaa..........cttacataagatttacatgccacag
| |||
| 10 | EOY24584-10 | 31,525,445 | 31,525,494 | 0 | 2 | 50 |
GACTACATTGCCAGCATTGATAGTGCAGCTCAAGCAGGATTGGACATAAC
|
| Intron 10-11 | 31,525,495 | 31,525,815 | 321 |
gtaattatccaagctcttgtttatg..........taaccgtatggtgttattatcgcag
| |||
| 11 | EOY24584-11 | 31,525,816 | 31,525,933 | 2 | 0 | 118 |
CTCTGACTTACAGCTCGCAATAGCTCTACAGCAACAAGAGTTTGAACAACAGCCACAGCG TCAGAATGTCCAGCAGCCACCCATTGTAGGTGCTTCAAGATTAGTAACAGGTCCCCAG |
| Intron 11-12 | 31,525,934 | 31,526,571 | 638 |
gtattttactccctcttccatctaa..........aaatggcagaagtggcattttgcag
| |||
| 12 | EOY24584-12 | 31,526,572 | 31,528,658 | 0 | 2 | 2,087 |
GTGCCAAGAAACAGCGGAAGGAACTCTTCATCTTCATCATCAAAGCAAGATGCAAAATCA AAAGACAAGTGTATCGTGATGTGAGTTTTCGCCATCAATGCATTTGGGAGGTGGTCTTAT TGTAAATGGTTTGTCTGTCTTGGTCCCATTGTATTTCGACACTAATAAAACCCTGATTAA CCATGCATGGCATTTTAGATCCAAGGTTTTGACTGTAAAAAAGAAAAAGAAGGAAGTATA TACCGCAATAGCACTTCACTCTATCCAAAGCCTAGAACCAATCTTTCTTCCATGCTGGCA GCGTACTCTTCAACAGTTTTTATGTTATTTTAAGCATCCGTGTTTCTCGGAAATTGCAAA TTTTGTGGTCCCAATCATAAGCAAGCTCAGCGTGACCCGTGGGAAACTTGAACATACCTC ACCTCACCTCACCCCGCCTCCCCTCACCTCGTTCATGAAGGAGTAGCCCAGAGTGGAAAA AGTCATGCTGGGAACATTGTTATCAAAGCAGCAGCACATTTGGGACAGAGGCGTGATGGT GATGGAGCACAACAAATTGACAAGAGCAGCATTTGGGGATTCAATTTTTGAAAGAGTCTG TATATGGCGTAGGGTTTGTTCTCTCTGGTCAATTCTCGATGCCTTCAACATCAATTGCTT CTTGTAGTGTCAGCGTCGACCAAGGTCTGGGCCTCATCTTTAATTGACTTGTCACTGGAG TAACTAGACTCTATAACCACTTGGTATCCGGTAAAAAATGTATGTGTTCAATTTCTTATT CACTTCGTTTTTTCTTCTAATCCTTTCTCATCACTAAACCGTAAAATGTTTTACCTTCTC GCACTTGGAAGTTGAAACATGTCACAATATATCAATCAATTCATAAAAATCTTTAATCAA GTGGTACTTGCATATTGGAAGTTGGATAAATCAAAGATTTACTTTAACAAATAAATTATA AACGTGACATTCAACTTTGGAACATTATAGTTTGAGAGCAAAAGCAGTGCTCTCAGTCTG AAAAGCAAGCAATTTTCTTTTGTCCAAATGCAACCGAAACTACGACAAAAGTTTTTATCG ATGGGGATGTTGTTGCATCTTCAATCACAACACTTTCTTCTCATGGGTTCGCAATACCAA AACCCTTTGAAATTTGTACCATGGAAGTTGGAAAATCGGGGATTCGTCGCTTAATATTGC TGCGATTATAAATAAATAATTAAAGCCAAATGATAGACCTTGTAACATATAATTGTACAA TGCAACCAACCAATTTATTTATTTTTTAGATAAATAAAAATAAAAAGAACCAACCAATCT AATTTCTTTCAGGACCCACAAAGCTAATTACCGACAGCAATAGGCTGAGACCGTAACATA CAGATTCCGACTAAGCACCGACAACCTGCCCCTTTTCTTCCTTCAACATCTGCCCATGAT TTGATATTTTTCCTTTATTTCCAAATTACCAAAAAAAAAAAACCTACACAAACAAACCAT GCAAAGGTTCCTAGTAATCTAATCGGGTGTGGTCGTCAAACTTTTTTATATGATGAATAC ATAGTAATTAATAATCTAATGTTCTAGAACAATAGGCATTAGTTATTACTAGACGATTCA AGACACTAAACAATGCCAGAAAACTAGATCATTAGACCAAATTGTATTACTACTTTTTTA ATTGGTTAGTTGGATAATACCAATTTTTATAATATCAAAGTTTATAATTTGTGGGTTACC CTAAAAATCATGATTATTGACTTTGGAGAGGAGGTGTGAACTTTGTGAGGTTAGAGAAGA ATGCGAGAAAAGAAGAACAAATAGGAAAAGAAAAGGAAAAACAGATGGAAAGGATGGATT GTGGGGTTGATGATTTTGACAACACCCACATCCATCCAAAATCCAAATTGCATACGTATA TGTAATATTAGTAATTAGATAGTATTCATTTATGTATTAAGTTTATTCTATTTTTTTTGT TTTAAACAAAAGGTTTTGAGGATATTTTAGTGATGAGGGTTGGGAAGGAGGGACCACTGT TTTTGTGGGAGTTGTTTTATTAGTAGGTATAAATGAGTTAATGGAAA |
| 3' downstream sequence |
acaaaaaaaaaaaattagggtggtcccttgaggctgagggtgtcgcaatc..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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