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    Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼

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    Transcript: EOY20888

    Description

    Ubiquitin-associated/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 domain-containing protein, putative

    Location

    Chromosome 3: 1,664,520-1,669,519 forward strand.

    About this transcript

    This transcript has 7 exons and is annotated with 29 domains and features.

    Gene

    This transcript is a product of gene TCM_012227 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -EOY208883937886aa
     
    Protein coding
    		A0A061FUX7 -Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........ttccaatcccctgcggtcaatgccaaacccccaaaccccgcacctcatac
    1EOY20888-11,664,5201,665,02700508 
    GTGGCAAATTTTAAATCACAGGATGATACGATAACGCAATAGAGAGTCCTGATGAGATGA
TACCACAAGCGCGATAGTGTCCTGATGAGATGATACGATAACGATTGGGTTCCTTAATCA
CGATGGTAAACCCAACCAAAATTTTCTTTGGGAGAAAGAAAGTCAATGGGAAATTTCTTA
TTGGCCAAGCCACTCGTGATTCTATAAATAAGCCGAGAGGGCTTTTGTTTGGATCGAAAA
AGCTTTTGCGAGAAGGATTTGCGGAGAGAAACTTAGGGAGGAAGAAAAAGGGGAAACCAT
CAAAACCTCAAAAGATCGTTTCGTGTAGAGTTTTCTCCGAATTAATCGTTTGGGAGACTT
TGAATTGTTGATCTTATTGTGGGTTAGGGTTTTTTTTTTTGTAATTTTTTCTCGTTTAGG
GATTAAAAATTTTGTAATCTATTCTCGTTGGCCGAAATTCATCTCCTTATTCGACGTCGA
CGGAATGGAATCCAATCTCGTTATCAAG
     Intron 1-21,665,0281,665,616589 
    gtttgattttttttgcttgtactta..........tgctttgcaaatgttatggagacag
    2EOY20888-21,665,6171,666,743021,127 
    GTTAAGTATGGAGATACTCTAAGGCGTTTTAATGCTCGAATTGATGATGCTGAACAGCTG
GATCTTAATATGGCTGGACTGAGGGCCAAAATTATTGGGCTTTTCAATTTTCCTGCTGAT
GCTGAACTTACTCTTACATATATTGATGAAGATGGGGATGTTGTTACTCTTGTTGATGAT
GATGATCTGCGTGATGTGATGAGGCAACGTCTTAAGTTCTTGAGGATTGATGTGAAGCTG
AATAATGATAAGTTTGGTAAACTTTATACTGGATCAAGCGGAAGTTCTACTCCCTTAAGA
TCCCCATCTGTACAGCCTCCGTTGGCAAGCTTTAATACTGGAGCTGCTGATGTATTGAAA
TCTGTGCCAGAGCCTCTACATGATGCTTTAAGTGAAGTTTTCTCAAAGCTGTCCTTTGAT
GTTACTTCGAAAGCTGCATCTGCTAGTCCGGTGCTAGGTGATCTTGTGGAGTGCTTGTCT
AAGATGGGTCAATCCTATCTGAGTCCTGTTTCCCAGTCTGGAGCTGGTGTTAATACAAAC
ATACCTGTTGGAACTTCTGAGAGCCCTAGTGCCCCATCTGCCCCAACTGATCCCAATCCT
TCAAAGGGTGCTGGCTTACGAGCAGTTTTGCCAAAATGTACAGCTGATGACTCAAGTTGC
GAGGCTAGCAAGGAAGCCAACAATGGAAATGCAACGAGAGGTGTAAATGTGCCTGCTGCT
GTTGATTTGAATGTTGATCCTCCTGCTGATGTCAACCTGACTGGATGTGCTACCATGACC
TCTGGATCATCTGCGTCAAACGTTTTTGCTTGTAATGACAAGAAAAACACAAAGGAGAGC
AATAGTCATAACAAGGGGAAGAGTGTTAGCTTGGATACATCAACTCCCCTTGTTGATACA
AGGAAATATTATCCTATCAGTGGGATGGGTCCTTCAAATGAATGTCCCTTCAGTGGAGTG
CCAGTAGCAAACGACCCTGTTGTGCCTCCTTTTTTATACCATCCCTTTAGTCCAAGTAAA
AGGAGTTCCACTCATGAAAATCCCATGTTTGGTACATTCCACAAGGGAATTCAATGTGAT
GGTTGTGGGGTTCTTCCCATTACTGGACCTCGGTTCAAGTCCAAAGT
     Intron 2-31,666,7441,666,82986 
    gtaagaaatgttttaagtgctgatg..........aacttctctttacttgggaatacag
    3EOY20888-31,666,8301,666,95320124 
    AACAGACGATTATGATCTCTGCAGCATCTGCTTTTCCAAAATGGGAAATGAAGCTGATTA
CATCCGAATGGACAGACCTATGCATTACCGGCATCCACGGTGTTTCAGGGCATCAAATGA
TCAT
     Intron 3-41,666,9541,667,02673 
    gtaatttccttagctgtttgcttca..........acatctgatgtgttcctatttacag
    4EOY20888-41,667,0271,667,27800252 
    ATTTCAAGGGCTGGTGGGCCAGCACTCCTGCATATCTTGAGGAATCGTGCGATGAAGTCA
GCTCGGCCTAAGGTAGACAGTCGCTTCATCTTGGATGTCAATGTACTGGATGGGACTGTA
ATGGCTCCATTTACGCCATTTACAAAGATCTGGAGGATGCGCAATAATGGTACTTTGCCC
TGGTGTGGCAGAATGCAACTTGTCTGGATTGGGGGAGACAAGTTCAGTGATGCAACCTCA
GTTGAGATAGAG
     Intron 4-51,667,2791,667,400122 
    gtagagtgttttatcttttgtatta..........tgttggtcctcccaacttgtgacag
    5EOY20888-51,667,4011,667,55000150 
    ATTCCTGCTGATGGTATACCTGTTGATGGGGAACTTGATATTGCCGTTGATTTTACTGCA
CCACAGTTGCCTGGTCGATATGTTTCTTACTGGAGGATGGCATCTCAAACTGGTATGAAG
TTTGGGCAACGTGTTTGGGTTCTCATTCAT
     Intron 5-61,667,5511,667,64292 
    gtaagtattttattttcaatatggt..........ttttgattatgatttgttactacag
    6EOY20888-61,667,6431,668,52700885 
    GTTGATGCTTCCATTAAGGAATCTATTAGTGATAACTTCCAGGGCTTGAACTTAAATTTG
CCTCCTGAAAGCAGTGGCCTCAGAGACTCTGAGATTGTAGATATGAATGTTGATCTCGTT
ACAGAGCTTTGCAACTCTAATGCAGGCACTGAGCCTCTGGAGCCCATGGTTAATGACCAG
CCAGCAAAGGAGCATACAGTAAACAATAGTTTGCTGCTTGACAGTGATGTCCCAATGCCT
GTTCCTAAATCTTCATCTGTGACTTATCCCATCATTGACCAAGGTGTCTTTGTCCCTGTT
CACCGGCCGCATACATTATCTTCACCTGCAGCATATCCCAACATTGACCAAGGTGTCTCA
TCTCCTGCTTTTCCGCACATTCCGTCTCCGTCTGTGTCTTATCCCATCATTGATCTCTTA
GAAGCAGCTCCTGCTGGACCCTTTCAAGCACCACCCCCTGCAATATGTGTACAAGCACCA
TCTCCTGCTAGACCCTCTCAAGCACCAGCCCCTGCAATATGTGTACAAGCACCATCTCCT
GCTGGACCCTCTCAAGCACGAGCCCCAGCAATATGTGTGCAAGCACGATCTCCTGCTGGA
TCCTCTCAGGCACCAGCCCCAGCAATATGTGTACAAGCACCATCCCCTGCAATAAGTGTA
CAAGCACCATCCCCTGCAATAAGTGTACAAGCACAATCTCAGGAGGACATTGAAAATGAG
TCTGTTGAGCAGACTCTACTTAAGGAACTTGAAGAGATGGGATTCAAGCAGGTTGATTTG
AACAAGGAGATCCTGAGGATGAATGAATATGATCTGGAGAAGTCTGTTGACGATCTTTGT
GGGGTAGCTGAGTGGGATCCAATCCTTGAGGAGCTGCAGGAAATG
     Intron 6-71,668,5281,668,628101 
    gtaaactgcctgcagaaatcatctt..........aaattggctgttgtgttgtgcgcag
    7EOY20888-71,668,6291,669,51900891 
    GGTTTCTGTGATGCGGAAATGAACAAGAAGCTGCTGAAGAAGAACAATGGGAGCATCAAG
GGAGTTGTCATGGATCTCCTCACTGGTGAAAGGGCTTAAGTGAAGGATAATGTTCCTTTC
TTAGGGATATGCTATACATAAATAAAATCAAGAGTGCTCCCAAACCATCTCAAGTAGCTG
CTTTTAGTTTTCCAGGGGTGTTTAAGTTCTGTAGCATATAGGCCCAGAGGGGCTGTTAAC
ATTTTGCTATTATTGTCTGAAACTTATAATTATCTTTATCCTATAAATATTTTACACCCC
TCTTTCTTGAAAAAAGAAAAAAAATGGTTCATTCCTAGCAATCTTTAGAATTTAAAACAA
TATTAAATTCAGAGTATTCAGTGCATAATTATATTTTTCTTACTGTTTGGTGAATGGTAC
CTTACATATATACTCAGCAAAAGATATCTTTTCTTCTTTTCTCCCCTCTAAGACAGCAAA
ATGACCAAACAAAAGCTTGATCATTTATCTTATTAAGCAAGGAATAATGTAGTTCCATTT
TAGCTAAGAATTATAGTAGATAGAAACCTAAATTAAAATTAGTAGTAAGTGATATGCACA
TATTCTCCTCTTCCTTTGCTTATTGAGTTTTGAGTTAAACAAAAGCATTATAGTCATTAT
AAAAGTATCAATTTTGATGTATTTTATATTAAAATTTGAAAAAAAAGGTTTATATTATAG
ATATTTAATTTTTTATGTGAAAAAAATAAAAATATAAGAAATAAATTTATAATATAGAAA
ATATAATGGTATTATGTGTCTACAAAATGGAAAAAATATCTTCATTTTGAAAAAAAGAAG
ATGAGTATAAGCTATAATTTTATCTTCACCAAATATACATATATGTAATAA
    3' downstream sequence 
    ttatctttgaaatcacattatttttaatttaatatgatggtgccaatgtt..........

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