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Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

ARM repeat superfamily protein isoform 1

Location
About this transcript

This transcript has 5 exons and is annotated with 20 domains and features.

Gene

This transcript is a product of gene TCM_010795 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-EOY008734796773aa
 
Protein coding
A0A061E892 Ensembl Canonical
-EOY008743082516aa
 
Protein coding
A0A061EF16 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Variants
  • 3 prime UTR
  • 5 prime UTR
  • Missense
  • Synonymous
Markup
  • loaded
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gacaaaaaaagattattataaaaaggacaattgagtcatttgatagcatt
1EOY00873-135,640,37535,638,565001,811
TAAGACAGATCTGCTAACCGACAAACGAGGAGGTCGGCAATTGTCGGCCGTCGAACCAGG
GAGACATAAACGAAGAAATCCAAACCCCTCCCCCCAAATTTCAAAAACCCTTTTTTTTGT
TAATTTCTATTAATTAATTAAACTATAATTAAACATTAAACCGTCTCCTCGCAAAGTATT
CACTCCACAGTCTACACTCTCACAGTTGTTTGTTTAATCCCGCTTAAAATAAACTTTTTT
TAAAAGAGAAAAAACTATTTTCAAATATTCCTTTCCATTTACCCCCCCCTTCCAATAACC
AAACACCCCATCTTTCTCTCTCTGCAATTCTTCTCTCCCTCTCTCTCTCTCTCTCCGATT
CTCATCTCTCTACTCCGACAAATTCGCTACTTCGGACAACAAATATTTGAAACCAAAAAC
CTAAGTATACAAGGAGATGGGATCATCGAAATCCTAATTCCCTGTTTGGCTCTTCATTTT
TTCTCTAAATGCTCATTTGTATGAAGCCTCCTTGGCTACCTCCGTTTTTCCCGGTATGTC
TTTTGATTTCGAACCCTAACTCAGATTCAATTCTATTTTAATTTTTCTTAAAAAAAGGGG
TTATTTTTCTCGTCGGATTTTTTTAGCGGTACGTGAGTTGGAAAATAGGCAGGACTTTTT
TTCTTTTATTTTGTTGTTGTTGTTGTTGGTTTTTTTTTTTTTTTTTTGTAATTCCGTGTT
TGGTTTGTTTCTGTTTTTTCTGTTTTTCGCAATCTCCGTAGGAAATTCGCCTTTCTTTTA
TAGGTTGGTAGTTTTACCTGCTTAGTCTTTTATATGTTACTATGTTTGTGGATTTCTGGT
TTTTGCCTGTTTTTGGATTATCGATTAAAGGCAAAGCTGATGGTGATTCTCGTGTCTTGT
CTCGGTTAAGATCTCTGGGCTTTCACAAGGTCATTTTCCAAACAATCTTAGATTCTTTCT
TTTCTTTCTTTAACACTACTCTTTTGATTTAACTGTTTTTGTTGAGAATCTTGAATTTTT
CAGTTGTTTGATAAGACGTCTAAATCAAATTGTTTGTTCTTTCTTAAAACCAATCATGAG
TTTTTATTTCCTATTGGAAATCTTCTTTTTGAGTTCCGTTTCCGTTGTTTGATGAAATGT
CTAAATCAAAATTCAAAATTCTGCAATTTTTTTATATAATAAAGTGGTGTTTACCTTTTT
TTTCGAAATTGCAAGGAGGTCCAGATCAATAGCTTATTCAAGAACGCTCATATTGCCTAG
TGTTTTTCTTTTAGGTGGAGGTCTTTTCCTTATCCGTTTCATGTTTCATGTTTCATGTAC
CGGAAAGGAAATGTTTGAAAAGTGTAATTTTTTATGAATAATGGTTCTAATTGTTTATTG
AAACAAGGAACTTTTGAACTGAGACTAATAAGTCATTTGCTGTGTTTAGGTGCATATGTT
TTAGGAAAATTGAAGTAGGTAAAGCTTGATTTCAAAATAATGCAACCAAAGAAAAGTTGA
GAAATTTGTTATTGGTATTCATGAAATATGATTGGTCATGATTTTTTGTGTCAAAGAGAA
AGGAAATGGATTTTTGAGATTGTTATGTTAGTTAAGGGAATGATTTTTAAAGTTATCCAC
ATAATTTGAACATTTCTTGCGTTGTTTTTGAAATATTTTTAGTGGTGAGGTTGTAACCTA
TTTGACCCTGTTCTATTTCCTCTTGCATTTCAGTTGATATAGATTTGCATTTAGTGGTTT
CCTGCAGTGAATGCTAAATTATGGACACTTCTGAGGTTGAAGAGAACCTATTTGCAGCTA
GTGATGCCAAG                                                 
 Intron 1-235,638,56435,638,216349
gtatgaatttggtagcatttggata..........tttttctgaattttttcttatgcag
2EOY00874-235,638,21535,638,03000186
TTACATGGAGAAATGTGCAAGACACTTTCAGCAATTTATTGCAAAGTCTTGTCAATATTC
CCTTCCTTGGAAGCAGCACGTCCTAGGAGCAAATCTGGTATTCAGGCTTTATGCTCATTG
CATATAGCACTGGAGAAGGCCAAAAATGTTCTTCAACACTGTTCAACATGTAGTAAACTT
TACTTG                                                      
 Intron 2-335,638,02935,637,830200
gtaagagtttcttgtatgcctccac..........taatggtattgtttttctcatgcag
3EOY00874-335,637,82935,637,72200108
GCTATTACCGGAGATTCTGTTCTCTTAAAATTTGAGAAGGCAAAATGTGCTCTTATTGAT
AGTCTTAGACGTGTTGAAGATATAGTTCCACAGTCCATTGGATGTCAG            
 Intron 3-435,637,72135,637,386336
gtaatgattcccaccttcctggttt..........gattactgtaaattattggcttcag
4EOY00874-435,637,38535,636,205021,181
ATTTTGGAGATTGTAAGTGAACTTGAGGGGATTGTTTTCTCACTCGATCTGTCAGAAAAG
CAAGTTGGTGATGAAATAATTACATTGCTTCAGCATGGGAGAAAATTTGATGACTGTAAT
GACAACAATGAGCTCGAGTCTTTTCACCAGGCTGCTACTAGAATTGGTATCACTTCTTCA
AGAGCAGCCCTAACAGAAAGAAGGGCTCTCAGGAAGCTGATAGAAAGAGCTCGTGCAGAG
GAAGACAAGAGGAAGGAATCTATTGTTGCTTATCTTTTACATCTCATGAGAAAATACTCC
AAGTTATTTCGAAGTGAGGTTTCAGATGATAATGATTCTCAGGGTTCAACACCTTGTTCC
CCCACCGTTCTGGGTTCTCTTGAGGATGGAGGCGCTGGTGGTAATGGCCAGGCATTTGAG
CGGCAGCTATCGAAGCTCAGTTCTTTCAATTTCAAGCCAAATATTAGGAGATCTGGGCAG
ATACCCCTTCCACCTGAAGAATTGCGATGTCCAATATCATTGCAGCTTATGTATGATCCA
GTCATAATTGCCTCTGGACAGACATATGAGAGGATCTGTATTGAGAAATGGTTTGGTGAT
GGGCACAACACCTGCCCAAAGACTCAACAGAAGCTCCCACATCTCTCTTTGACTCCCAAT
TACTGTGTTAAGGGTCTCATTGCTAGTTGGTGTGAACAGAACGGAGTCCCTATTCCCGAT
GGTCCCCCAGAGTCTCTTGATCTTAACTACTGGAGACTGGCCTTGTCTGAGTCTGAGACT
GCAAATTCAAGATCAATGGATAGTGTTGGTTCATGCAACTTAAAGTGGGTTAAGGTGGTT
CCTTTGGAGGAGAGTGGTACCATTGAGGAAGTGGAAGGAAATGAAGCTGAAAATGAATCC
CCATGTCCACAGGTGGAAGTTTCTGAGTTTACTGTGCTAGAAAGATATCAGGATTTCCTA
TCTGTCTTGAAAGAAGAAGAGAACTTGAGGAAAAGGTGCAAAGTTGTGGAACACGTAAGG
CTTTTGCTGAAAGATGATGAGGAGGCCAGGATGTTTATGGGGGCTAATGGCTTTGTTGAG
GGATTAATGCGATTTCTAGAGTCAGCTGTGCGTGAAGTGAATGCAATGGCTCAGGAAATG
GGGGCTATGGCACTCTTTAACCTTGCTGTCAACAATAACAG                   
 Intron 4-535,636,20435,635,908297
gtttgctactcatgtttttattaaa..........tcactttttttaataaaaaaatcag
5EOY00873-535,635,90735,634,398201,510
GAACAAGGAGCTGATGTTAGCAGCTGGAGTGATTCTATTGCTGGAGGATATGCTTTCCAA
CTCCAATGCCCATGAATCAGCAACTGCTCTCTATCTTAATCTCTCTTGCCTTGAACAGGC
CAAAACTATCATAGGCTCAAGTAAGGCTGTCCCATTCTTAGTCCAGCTACTTGGAGGTGA
AGCTGATCCACAATGCAAGCTTGATGCCCTTCACACTCTTTATAACCTCTCTACTGTGCA
CTCAAATATTCCGAGCCTTCTTTCAGCTGGCATAGTCAATGGCCTCCAGTCACTCGTGGT
TTCTGGTGACCATACCTGGACAGAGAAATCCATTGCAGTTCTGCTAAATTTAGCTTCAAG
TCAAGCGGGAAAAGATGAGATGGTATCAGCCTCTGGTCTCATAAGTGGTCTTGCTTCAGT
TTTGGATGCTGGTGAATTGATTGAGCAAGAGCAAGCTGTTTCATGCCTTCTACTTCTTTG
TAATGGAAATGAGAAATGTAGTCAAATGGTCCTACAAGAAGGTGTGATTCCTGCATTGGT
GTCAATTTCTGTAAATGGGACGACAAGAGGAAAGGAGAAGTCACAAAAACTCCTGATGCT
ATTTCGGGAGCAGCGACAACGAGATCACCTACCTGCGGACTTACACAAGAGGGTAGAAAG
CAGTCAAGCGCCCATGCCTGGTCCAGCCCCAGCTTCAGAATCCAAGCCACTGTGTAAATC
GGTATCAAGAAGAAAAATGGGGAAAGCCTTGAGCTTTCTGTGGAAGAGCAAGAGCTACTC
GGTTTATCAGTGTTAAAACGTGGCAAGCTATTGTAAATTTCCCTTGTATCTTCTTTTCTA
TTTCTCATGTCCTGTTCCAATGGACAGTATTTATCTTTTTTTGGGTTATCATAGAGAAGC
AGAAATGTACAGGCCCTTTGTAATCTATGGATTTTTGTGTCTTCTCCATTTTTGTGTAGG
AATACATGTCCCAGCTATTGTCAGAATTGAGGTTTTAGATTTATCTTCCAAAGATATGGC
AGTCCCTCCACGTGAATATTTATATATGGACTGTAATCTATAAGATTCCAACTACCAACA
CCAATGATTCTGAGGTAGAGATCTAAGATTATAATTTTCAGATAATTGCTCAAGTCTCAA
CAATAGGCTATAGCGTCCTGTAAATTTTCAGTTGATGCAGGTTTGACACCAGACACTTAA
CCCCAGAGGGCCAAAATGTGGAATTTTTTTAATTTTTCGTCTGCAAGGGAAGGGTATGAA
ATAAAATACAGTTATGAGTTTTATAAATAATTTAAATATAAGAGTGCAGATCAACAAGAA
GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC
CCCACGGTGGGCGTTGACATTTTGGAATTTGCATTGTTAGGGTCACTACTAATGCAGTGG
TGTTCGTTACTTTTCATGATGTAATTTGAAAAAGTTGAATGCAGAATGATAATAAGTTCA
CTTTTCTAAT                                                  
3' downstream sequence
agcaattgacttggtttttgtaaatttacataggaaaaagctttcaagct..........