Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Histone deacetylase 1 isoform 1
Chromosome 2: 7,947,289-7,951,618 forward strand.
This transcript has 7 exons and is annotated with 20 domains and features.
This transcript is a product of gene TCM_007621 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........aggaagggtaagaagcagggcaccattctagtgtagtaataaaagacgga
| ||||||
| 1 | EOX98962-1 | 7,947,289 | 7,948,537 | 0 | 0 | 1,249 |
ACCACTTTCTAAACTTAAAAACGCTGCTGCCTTTGTCAAATCTCCTTACTCCTAAGGGAC GAGGCCGTTTGATTCGTTGATCATTTCTTTTTTTTTATTACAACATTCAGCAATTGCGAA CTTGATTTTGAGGCAAAGAAGGAAAAAGCCTACTCCGCTCTCTTTTACGGGTAAAATAAT TTTGTTTCTATTCTGGGTTGTGTTTAAAGAGGTTTGATTTCTTTCGTTCGAAGTTATATA GTTAAAGCTTGTCAATTATTTCTGTTTTTTTTTTCTAAAACCGTTTTCCCAGTTTGCTTT CCCTATTAGATGTACCTTTGGTTTTTGGAAACTTTGAATCACATTTCCTGCCTTTCTTCA ATTTGTGAATACTTGTTTTGCACATCAACGGCCATTGTAGTAGGCTAAAGTTCTGGCTTT TTTCTGGGTAAATATGTTATTGTTGAGAATATTGTGAATAAGTTCCCTTCTTATCTTCTC ATGGTAAATCTCGTAAATGGGTTGTTAGGGGTTCTTACTCCGTGAACTTTAGATGTTTGT ATGCGTGAAATGATATATTTTTGACAATCTCTCATCGAGTGGAATGAGCCTTGTTCCTCT TCAATTCCTTGTCCTTGGGATGTTGATTAAATACGCTTTGTTACTTGTATTAGTTAATCT GATTAGAATTGTTCATGAAAGCAGGAAAACGAGGAAACTGAGATCCTAAGCTTAGTATTT AATGGACACCGGAGGGAATTCATTACCTTCAGGGGCTGATGGGGTGAAGAGGAAGGTTTG CTATTTCTATGACCCGGAGGTGGGGAATTACTATTATGGGCAAGGCCATCCTATGAAGCC TCACCGAATTCGAATGACCCATGCCCTTCTAGCACACTATGGGTTGCTTCAGCACATGCA GGTTCACAAGCCCTTCCCTGCCAGAGATAGGGATCTTTGCCGCTTCCACGCTGATGACTA CGTGAACTTCCTCCGCAGCATAACCCCTGAAACGCAACAAGATCAGCTCAGGCAGCTCAA GCGCTTCAATGTTGGTGAAGATTGTCCTGTCTTTGATGGCCTTTACTCCTTCTGTCAAAC ATATGCCGGTGGATCTGTAGGTGGTGCTGTCAAATTAAATCATGGTCTCTGTGACATTGC CATTAATTGGGCTGGTGGTCTGCATCATGCAAAGAAGTGTGAGGCTTCGGGGTTTTGCTA TGTCAATGATATTGTCCTTGCAATATTGGAACTACTTAAGCAGCATCAG |
| Intron 1-2 | 7,948,538 | 7,948,973 | 436 |
gtatgttctttatatcttaattcct..........tgcttctgcattctccttgttgcag
| |||
| 2 | EOX98967-2 | 7,948,974 | 7,949,414 | 0 | 0 | 441 |
CGTGTTCTATATGTTGATATTGATATCCACCATGGAGATGGTGTGGAGGAGGCATTTTAT ACAACTGACAGGGTCATGACTGTTTCATTCCATAAATTTGGAGATTATTTTCCAGGTACA GGGGATGTACGTGATATTGGATATTCAAAAGGGAAATATTATTCCCTTAATGTTCCTTTG GATGATGGTATCGATGATGAGAGTTACCATTACTTGTTTAAGCCAATTATTGGTAAAGTT ATGGAAGTTTTTAAGCCTGGTGCTGTGGTCCTTCAATGTGGTGCTGACTCCCTATCTGGA GATAGGTTGGGATGTTTTAATCTTTCAATCAAGGGTCACGCAGAGTGTGTTAAATTTATG AGATCATTCAATGTTCCGCTGTTGCTACTGGGTGGTGGTGGTTATACCATTCGGAATGTT GCTCGCTGTTGGTGCTATGAG |
| Intron 2-3 | 7,949,415 | 7,949,959 | 545 |
gtaactggcctattactattacaat..........ttaatagcgatatctatatgagcag
| |||
| 3 | EOX98962-3 | 7,949,960 | 7,950,190 | 0 | 0 | 231 |
ACAGGGGTTGCACTTGGAATGGAAGTTGACGACAAGATGCCTCAACATGAGTATTATGAA TATTTTGGTCCAGACTATACTCTTCATGTTGCCCCTAGTAACATGGAAAACAAGAATTCA CGGACATTACTTGAAGATATACGTAATCAGCTACTTGACAATCTCTCAAAGCTTCAGCAT GCACCAAGTGTCCAATTTCAAGAAAGACCACCTGACACTGAGCTTCCTGAG |
| Intron 3-4 | 7,950,191 | 7,950,585 | 395 |
gtgtgttctgcagctacttcatttt..........ttgctttttgatttgtaatgttcag
| |||
| 4 | EOX98962-4 | 7,950,586 | 7,950,656 | 0 | 2 | 71 |
GCTGATGAAGATCAGGATGATGGAGATGAGAGATGGGACCCAGATTCAGACATGGAGGTT GATGAGGAGCG |
| Intron 4-5 | 7,950,657 | 7,950,769 | 113 |
gtatttatctttcaatctttttcta..........tcattgactcatcacatttatgcag
| |||
| 5 | EOX98962-5 | 7,950,770 | 7,950,827 | 2 | 0 | 58 |
CAAGCCAATCCCAAGCAGAGTAAAGAGAGAAGCAGTTGAACCTGAGACAAAAGATCCG
|
| Intron 5-6 | 7,950,828 | 7,950,927 | 100 |
gtatgctttatgctataaatgttag..........tcattatggcttatattcttctcag
| |||
| 6 | EOX98962-6 | 7,950,928 | 7,950,999 | 0 | 0 | 72 |
GAGGCTCAAAAAGGAACTGCTGAGCAAGCTAGAGGCTTTGACACTGCAACAGATGAGACT GTAAGTACAAAG |
| Intron 6-7 | 7,951,000 | 7,951,130 | 131 |
gtgaagttttgagacacaagcagca..........gttgtcttgatgctggttcttgcag
| |||
| 7 | EOX98962-7 | 7,951,131 | 7,951,618 | 0 | 2 | 488 |
GCTGTAGATGTCAGTCCTATGCCTATTGATGAACCAACTATGAAAGTTGAGCAAGAAACA TTGAACAAAGCAGCTGATCCGATGTACCCGAAGTCCTAAGCAACAATCTCTCAAATAGAT ACTGGATGTTTATCTGTGAATTCAGATTTATAATTGTGCATTAGCATTTTGTCAAACATT ATTGGCCCCTATGTTTATTAAGTTTAAGTTTGTACAAGTCATGAAAACCTGAACGATTTT GCTTTACATTGTAGCTTCTTCAAGTTTGAACTTGAAGTTCAAAACAGTGTAAGATTATTA GTAGCAGTTTATATAGCCAAGAAATTTTTCTAGCATTCTCATTTATAGAACAATGGCAGA AAGATGGTGAATGCTGGATCATTTTCCTTGTTACCAATAGGGTGATATCGTGGATCGAAA TTAAAAAGCTTGTAAGGTATGGCATTTGAACGATTTATGGTAATAGTACTTGTGTTCACT TTGGAAAA |
| 3' downstream sequence |
gctcatcttgcccttctactctttgtccaaaccagaaaggtaacaatgga..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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