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    Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼

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    Transcript: EOX94338

    Description

    Set domain protein, putative isoform 2

    Location

    Chromosome 1: 27,917,565-27,925,297 forward strand.

    About this transcript

    This transcript has 8 exons and is annotated with 16 domains and features.

    Gene

    This transcript is a product of gene TCM_003925 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -EOX943374917876aa
     
    Protein coding
    		A0A061DPJ0 -Ensembl Canonical
    -EOX943394390778aa
     
    Protein coding
    		A0A061DNF4 --
    -EOX943383841811aa
     
    Protein coding
    		A0A061DWF2 --

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........cacacgcgctactcctaataaatagccgagtaattgcttaaaactaaact
    1EOX94338-127,917,56527,919,154001,590 
    CTCTCTCAATTTAAAAGGAAAAAAATCATTTCTTTTTCGCGTGTGTATTGAGAAATCGAA
CATTTGAACGCTGTCTAATACTTGCCCTATGTTTGTCATGTGGGCTTTTTACTCTCACAG
AAGAATTGTGGTATGTTGTTGTCTCTGATTCTGGCTTTTTCTTTCTCGTTTCAAAATCAC
CTGACTTTCACTGCGCTTTTGTTTTTCTCTTTTAGCGAATGGCTCTCCGTTTTCTTTATG
AAACGTCTTTGAGTTTGAATCCGAAACGCTTCGTTTTCTCTGTCTCCGATTACTGCATTT
GTTTTTCTTTCGGCATTGCACTTGGTTTTGATAATTTCTCGGCTTAAGTTCTGTTTGTCT
GCTGAGAAAATGTCCGCTAGAGAATTTTTTTTCGCCTTCATAAGCAAAGTATTGAACTTT
ACGGAATTTGGTAATTCAGTAAGCTCGGTGAAATAGAGTTGTTTGGTCTCCGAAAGAGTC
TGTAAAAAGAAGAAGAAATTACAAAGTCAAGGTTTTTTAGCCTTTAAAGAATAAACCTAT
CTTTCCCCCTCCCCCCTCTTTTGTTTTCGTTTTGTTGGTATAATTATATATATATATATA
TATAGAAGATAACAGATTCAAATGGTAGTATTAGGCTTGCTTAATGTGCTTGTTTGTTTA
CCGAGGTTGTAGACTTTTTTTTTTTTTGAAGAAAAAAAAAGTAAAATTTTAAATAAAAAA
ATGTCGGAACAAAAAAGCAACTTTTTTTTTTTGGTGTCAAACTAATTCCTGCTATATGTT
CTGTTTCTAGGTTTTAAAAAATTGACTTTTTCTTCAAGGGTTTGGGCTCGTAAGGTAAAA
TGTTAACTGGCTTGTCCTTTTGCATGTAATCATGGAGGCTTTAGATTTTAGGTTTATTTC
TTGAACTTGAATTATCTCAAGTATATAAGTGTATTAATTCAAGAATGCGTTGACATATAT
GCTGATCTTCATCTTTGGATCATCATATAATTATCTTAATGTTGTTGTAGACTTCAGAAG
TTAAAAGAATGTTTGTTGTTTCCCACTTTGATTAAGTTAATTGTTTATTTAGTTAGTAAT
ATTTGCCAATCTTTCATCTTTGGATTATCATTTAATTTTCTCAATTTAGCTGTAGACTTT
AGAGTTAGAAAAGAGTGTTTAATTCCTACTCTGATTGAGGTAAGTTAATTATTTGTTTAG
TTAGTTCTGTATGCCAATCTTTCATCTTTGGATTTTTTGCTTTTAATACTTTAAAAAAAT
ACAGTATTTGTAATTTCCTGCTGCTACTTATCTACTTTTGTTTCTGGACTGACTGTTGTT
GCTTACCTTCTCTCAACAAAATGGGAAAATGTGTGTATAAATAGTTGGTGTTTGCAGGCC
TGCAAAACTGATAGCTGAGAAAGCATCATGGCACCAAACCCCAGAGTTGTGCAGGCCTTC
CGCTCGATGAAGGAAATAGGAATTACTGAAGAAAAAGTGAAACCAGTGTTAAAGAAACTT
CTAAAGGTGTATGATAAAAATTGGGAGCTAATTGCAGCAGAAAATTACAGAGTTCTTGCT
GATGCTATCTTTGAAGAGGAGGACAATAAG
     Intron 1-227,919,15527,919,23985 
    gtaaatttctttttattttatctgt..........ctatgatactgatcttgcttttcag
    2EOX94337-227,919,24027,919,2720033 
    GTGTCAGAACCTAAAAAAGGCCAGAAATGCGAC
     Intron 2-327,919,27327,919,376104 
    gtatgtgattcatctctctaactta..........gatagtgtttgattgtcttaactag
    3EOX94337-327,919,37727,919,98901613 
    GAGGAGGAAGATACTATGGAAGAAGGTGCAGTGCCTGATGAGCTTGTACGCCCTTTGAAA
AGAATACGTTTGAAAAACCAAGAAGGTCTGGCATCATCTTCTCATAACAATGGCAGCACT
GATGTGGCTGGGCCCTTTTTAAAAAAGCCTAAAGTTGAGGAGGATGAACTACCTCCTGCT
TCTTTGCGGCAGCAGTCACTTCAGTGCAATGTTGGAAATATGACAGAATGCCTGCCTGCT
TCACCTGGTTGTGTTTCACTGCAGCCTACTGCTCCTGGTCCTGTTTCACCCCATCAGGGT
GGTAGGAATAAAGGCAAGCAACCTGTAGCTCCTATGCCTTTGGCAGTCCTGGAAGGATAT
GATCAAAATTTGCATTCAACTCAAATGCATGTTAGCTACAAAGGAAAGGAACCTATGTCA
CCTCATGTCACTTACAATGAGAAAGGCCCTGAGAGAGTATCTCTTGCCTTGTGCATTAAA
GATCCAGCACCTTGTCCTGGTATTATTACTAAGAAAAGGATGCCTGATACTCATGCACTG
ATCATACCCAAGGAAGAGCCATTTACTGATGACATGCCACAGGACGAGGTTCCTATTGCA
GTTATTCATCCAG
     Intron 3-427,919,99027,921,0601,071 
    gtaagttattgtaattcccatgtga..........ttttaccataatacttttttaatag
    4EOX94337-427,921,06127,922,187101,127 
    ATTCATTAAGCAGAAGAGATTCGCCAATTGGGCATGTTTCAACTGGAAAATCAAATTGGC
AGGAACATCCAGAATCTCTGTTTGCAGATGAAAATGTAGGTGCTGGTGCTTCAGCTTCAA
TGAGTGAGAGGCACATCAGCTGCGAGCTTGCTACTGTTCCTGATGAAATTCCTTCTAGCC
TGGAAATTGCCTCATCACCGTTGGGAGAGGTGAAGATTTCTCTAAGCTACAATTCTGCTC
TTGGAAGATCGAATTTCCAATTGCCTAGTATAGATGAACTAAGAGAACTGATGGAGCAGA
GATGTCTCCGATCATATAAACTCATTGACCCAACTTTTGATGTCATCAAAATTCTGAATG
ATATGTGTGAGTGCATCTCGGAATTGGCAACTAATTCCTCTAATCAATCGCAGGAAGGTA
ATGTGATGCCAGCTCTTGATCTTTTGAAGAAATCTCCTGCAAGGGATGCTCTTGATGCTG
AGAGCAATAAGGAAAATGGTTGCTTACCAGCCAAGATGTTAAATGGAGCACTCGATGTTC
AGTGCTCTTCAAATGGATGTGTTGACAATGTGGAGGGAAAGGAATTGGTGGTTGTTCAGC
AGCATCAACTTACATCTAATGAATTAAGGTGGCTTCATGATGCAAGTGACATAACCAAGG
GAGAAGAAAAAGTTGAAATTTCATGGGTAAATGAAATTAATAAAGATTTTCCACCACCGT
TTCACTATATATCAGAGAATCTGGTGTTTCAAAATGCCTATGTTAAATTCTCTCTTTCTC
GGATTGGAGATGAAAGTTGTTGTCCAACATGTTTTGGGGATTGTCTCTTGTCCGAGCAGC
CTTGTGCATGTGCTTGTCAAGCTGGGGGAAAATTTGTGTATACTTCGGCAGGTGTTGTCA
GGGAGGACTTCTTAGAAGAGTGTATCTCTATGACTCGTGATCCTCAACGACAATGTTTCC
TTAATTGTACAGAGTGCCCCCTTGAGAGATCAAAGAAAGATGACTTTCCAGAACCTTGTA
AGGGTCACTTAAAGAGAAAAGTTATTAAAGAATGTTGGAGCAAATGTGGCTGCAATAAGC
AGTGTGGCAATCGGGTGGTGCATAGAGGTGTAAATTACAAATTGCAG
     Intron 4-527,922,18827,922,339152 
    gtttggcttcatcctagtctcgtac..........atgactaatttactctcgatgttag
    5EOX94337-527,922,34027,922,59002251 
    GTGTTCTTGACACCTGATGGAAAAGGTTGGGGCCTCAGAACTCTAGAGAAGCTTCCCAAA
GGAGCTTTCATTTGTGAGTTTGTTGGCGAAATACTCACCATCTCTGAGTTGTATGCAAGG
AACACAGAGAAACATACATGTCCAATCCTGCTGGATGCTTATTGGGGGTTGAAGGGAGTT
TCCAAGGATGAGGAAGCCCTCTGTTTGGATGCCACAGGTTATGGAAATGTTGCTAGGTTC
ATCAATCATAG
     Intron 5-627,922,59127,923,057467 
    gtaattgtatatatattgttgtgta..........ctagctttttttcttttgttgctag
    6EOX94337-627,923,05827,923,1242067 
    ATGCTTAGATGCGAACTTAATTGAAATTCCTGTTGAAGTGGAGACTCCAGATCTTCATTA
CTATCAT
     Intron 6-727,923,12527,923,22399 
    gtaagaaattctgatttcatccacc..........ctaatagagcgtttaccgtgtgcag
    7EOX94338-727,923,22427,923,2850262 
    CTAGCCTTCTTCACAACAAGAGAAATTGATGCACTTGAAGAGCTGACTTGGGTGAGTGAG
TG
     Intron 7-827,923,28627,925,1991,914 
    attatttatagttatttaattctga..........taagaggctatgtattctgcatgca
    8EOX94338-827,925,20027,925,2972198 
    GGATTATGGTATTGACTTTGATGACCTTGATCATCCTGTTAAGGCATTCCGGTGCAGATG
TGGCAGTAAGTTTTGCAGGAACATGAAACGTTCAACTA
    3' downstream sequence 
    gtaagtgattgtcatgtagaatttgtagacaacattttcatttcttctca..........

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