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    Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼

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    Transcript: EOX93390

    Description

    Ankyrin repeat and BTB/POZ domain-containing protein 1 isoform 3

    Location

    Chromosome 1: 12,588,567-12,593,162 reverse strand.

    About this transcript

    This transcript has 5 exons and is annotated with 18 domains and features.

    Gene

    This transcript is a product of gene TCM_002244 Show transcript tableHide transcript table

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    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -EOX933902242591aa
     
    Protein coding
    		A0A061DL11 -Ensembl Canonical
    -EOX933912525417aa
     
    Protein coding
    		A0A061DMS6 --
    -EOX933892523590aa
     
    Protein coding
    		A0A061DKR6 --

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........tgaaatttagctgagaatgttataataaaatgaagagggtgtcttgatat
    1EOX93390-112,593,16212,592,53001633 
    AAAAAAAAAAAAAAAAAGGAAAGTAGGTACGGCACGGAAGGAATCCGTTTCCGTTTGGAC
AAAAATATCATTAATCCAACCATTAAAACCCAAAATCTCAGCCGGAAACGGAAAATCATC
CTCCGAGACTCACCATTTCCCAAATGCCCCCATCTCCACCTCATTCCTCCTCCTGGACCA
TCTCCCCCGACCTCGACGACATCGACCTCGACGCTTCCGACTTCACCGCCTCCGTCCCTC
TCAAAAAGGTCCCCAACGGAGACATCTTCGAGGCCTCTCGTGCCGGCGACGTCGACCGTC
TCCGTTACCTCCTCGAGTCCGGTGTCAACGTTAACGCCCGTGATAACTGGGACTCCGTTG
CCTTGTATTACGCTTGCTTAGCTGGCCACTTGGATGCCGCCCGTATGTTACTGGAGAATG
GAGCCATCTGCTCCGAACATACCTTTGATGGGGACAGGTGTCACTACGCTGCTTTGAACT
TGAAGGTTCGGAAACTTCTCAAGGCTTTCGAGGCCCGTCCTCCGCCTCTTGGGCCGTTGC
AGGGTGCCCTTAGGGATACTTTCTTGAGCTGTGGGGCTAATCAGGCTTATCTCGACCAGG
CTGCTGAGAGTGGATTACATTTTGAAGTTTCAG
     Intron 1-212,592,52912,591,0811,449 
    gtcaatttaccctttcttttcaaat..........gacctaacatgtaatattcaattag
    2EOX93390-212,591,08012,590,32112760 
    GTCTTGCATCAAATGGGGCATCAAGTTCCTATCAGTTCCCCCCAGATGTTGTATTTTTTG
TGCAAGGCAGACCCATTGAAGCTCATAGAGTTATTTTAAGTGCCCGGTCACCATTTTTTA
AGAGAAAATTTGAAACAGATTGGAAAGATCGCAGTGAAGTGCGATTTTCAAGAGAAAAGT
TGTCTTATCCTGCTCTATACAGCCTCATCCACTTCTTTTATTCTGACAGACTAGAGGTTG
CTGTAGATGATATGGAAGATCTTGTGAGAATTTGTAAAGTATGCAAATGTGATTCGTTAC
AAAGGGTTCTAGAGAAAGAACTGATTCACCAAAAATATGCTGAATACAAAGCACTGAGAG
ACGTGGACAACTCTCAAAAACGGTTTATTTTACAGGGCCTGTCCCTCCCTGAGGAAGACC
GGCTTCCTGCTGCCTTGCATCGGGTCCTTCAAATTTCCCTGGCAAAGTCTCCCAAGGAAT
GCAACCTAGACAATGGTGTTGATACATTACAGTATTATGTTGGTGCAATGCAGATAAGTG
ACTCTCTGGATGATCTTGCAGATGTTTGTGTTAGAGTTGACAAAAGGATTTTTCGTTGCC
ATCAAGTTGTTTTAGCATCAAGATCAGAATATTTTAATGCAAGATTATCTCGTATGAAAG
ATTTTCATGAATGGAAAGATGAGTTAACTAGTGATACCCTTCCGTTTCTGGAAGAACATG
ACTTGAGTGCTGAGGCATTTGAGAAAATGATTGAGTATAT
     Intron 2-312,590,32012,589,985336 
    gtaaggttttttttttttctttaac..........tattatagctccataactgcttcag
    3EOX93390-312,589,98412,589,9482037 
    GTACACTGATGGTTTGACAGATATAGATCCAGATCAG
     Intron 3-412,589,94712,589,87078 
    gtattatatattttttttattgttt..........cctaatattaattattctaattgac
    4EOX93390-412,589,86912,589,73302137 
    CAGGCAGAGGAAATGTTTGATGCTGCTTCTCGGTATCTATTATTTCCTCTTAAGCGTGCT
GTAGCTGATGTACTGCTCCCACACCTAGAGATGGTCTCACCAGCAGAATTGTGCCATTGG
CTAATATTGTCTGACAT
     Intron 4-512,589,73212,589,242491 
    gtatggtatatctaccttattttcc..........ttttcatttcaattcacatgtgtag
    5EOX93390-512,589,24112,588,56722675 
    GTATGGTGTTCTGAAGATAAGAGAGTCTTGTCTAGATACCATTGCTTGTAACTTTGAGAC
ATTTGCTGACATATGTGAGTTCCGAGCAATGCTTTTGACACTGCCGCCACCATCTGGAGA
TTCCTCACTCCGGACAACTGTTCCAAGTGCCCCAGGAGCTGCAATTAATACAGACCAAGC
AAATCTTCTGGATGATCTTCGGGAAAAATGGCTTGAAGCAGAAGGTGCTGAGCTTGACAA
GAGAGATGAGAGCGCTTTACTCTTTGATAAGCGCCTAGAGATGCTTATGCTTGTAGCAGA
ACAAGAAAAATCTGTTCCCTCTGCCGAAGATGGCGAAGATTGCATTATTTGAGCTTTATA
CTTTTCATCCCTGCTTTGTTTCAAATGAACAACACATAAATGTTAAGCATAGACATTTTT
TTCCCTTAGACATATAAATGTCTCATTTGTAGCCTGGCTATATCCAAAAACAAAAAGATC
TCTGGGTGTTTTTGCTACCTCATTTGCTCAAATACTATAGTATCGATGATAGCACTGACA
AGACTTTCTTGTATACTTTTTCTCAAATGCATAGTTTTGATGATAGCATACACAAGACCT
TGTATATTCTTGTACCATCCACTTTCTTAAATGATTGAATGGGAACAGATAAGTGGATAA
TGTCATCTCCTAAGA
    3' downstream sequence 
    tctccatgatgtaatatttgggagattgaaatgataatttagtggatata..........

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