Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY32464

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Description

DNA-binding bromodomain-containing protein, putative isoform 1

Location

Chromosome 9: 29,967,906-29,973,185 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 34 domains and features.

Gene

This transcript is a product of gene TCM_040405 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY32463	2650	623aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GSR2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY32464	2644	623aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GSR2	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	2	69	-	1.10.10.60	-
PANTHER	5	623	-	PTHR37888	-
CDD	279	374	-	cd04369	-
SMART	270	379	Bromodomain	SM00297	IPR001487 [Display all genes with this domain]
PROSITE profiles	289	360	Bromodomain	PS50014	IPR001487 [Display all genes with this domain]
Pfam	291	364	Bromodomain	PF00439	IPR001487 [Display all genes with this domain]
Gene3D	224	385	Bromodomain-like superfamily	1.20.920.10	IPR036427 [Display all genes with this domain]
Superfamily	281	384	Bromodomain-like superfamily	SSF47370	IPR036427 [Display all genes with this domain]
Superfamily	10	81	Homedomain-like superfamily	SSF46689	IPR009057 [Display all genes with this domain]
SMART	8	63	SANT/Myb domain	SM00717	IPR001005 [Display all genes with this domain]
Pfam	10	44	SANT/Myb domain	PF00249	IPR001005 [Display all genes with this domain]
CDD	11	61	SANT/Myb domain	cd00167	IPR001005 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	117	128
MobiDBLite	117	269
MobiDBLite	154	171
MobiDBLite	221	232
MobiDBLite	380	623
MobiDBLite	426	446
MobiDBLite	472	482
MobiDBLite	483	516
MobiDBLite	532	543
MobiDBLite	544	554
MobiDBLite	555	565
MobiDBLite	580	589
Seg	79	95
Seg	180	192
Seg	243	248
Seg	342	352
Seg	534	564
Seg	566	579
Seg	610	623
Alphafold	1	623
Ncoils	99	119
Ncoils	497	517

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