Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY29252

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Description

Ubiquitin carboxyl-terminal hydrolase 19, putative isoform 1

Location

Chromosome 9: 492,685-499,487 reverse strand.

About this transcript

This transcript has 11 exons and is annotated with 20 domains and features.

Gene

This transcript is a product of gene TCM_036844 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY29252	3889	727aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GJD3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY29251	3170	727aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GJD3	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	53	106	-	6.10.140.2220	-
Superfamily	60	103	-	SSF144232	-
Gene3D	151	470	-	3.90.70.10	-
CDD	154	459	-	cd02661	-
Superfamily	151	467	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	155	458	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
PANTHER	93	539	Ubiquitin carboxyl-terminal hydrolases	PTHR24006	IPR050164 [Display all genes with this domain]
PROSITE profiles	155	461	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	156	171	Ubiquitin specific protease, conserved site	PS00972	IPR018200 [Display all genes with this domain]
Pfam	63	100	Zinc finger, MYND-type	PF01753	IPR002893 [Display all genes with this domain]
PROSITE patterns	63	100	Zinc finger, MYND-type	PS01360	IPR002893 [Display all genes with this domain]
PROSITE profiles	63	100	Zinc finger, MYND-type	PS50865	IPR002893 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	585	608
MobiDBLite	590	606
MobiDBLite	669	727
MobiDBLite	676	703
MobiDBLite	704	718
Seg	673	694
TMHMM	12	31
Alphafold	1	727

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