Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: EOY29044

.

Description

Transducin/WD40 repeat-like superfamily protein, putative isoform 2

Location

Chromosome 6: 27,190,191-27,199,817 forward strand.

About this transcript

This transcript has 12 exons and is annotated with 42 domains and features.

Gene

This transcript is a product of gene TCM_030472 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY29044	5412	1420aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GPJ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY29047	5628	1170aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GIS3	-	-
-	EOY29045	5409	1419aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GGP1	-	-
-	EOY29046	5076	1142aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GHK7	-	-

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	278	315	-	PS50294	-
Pfam	1289	1403	Enhancer of mRNA-decapping protein 4, C-terminal	PF21289	IPR049404 [Display all genes with this domain]
Pfam	231	543	Enhancer of mRNA-decapping protein 4, WD40 repeat region	PF16529	IPR032401 [Display all genes with this domain]
Gene3D	1333	1418	Enhancer of mRNA-decapping protein 4, conserved C-terminal domain superfamily	1.10.220.100	IPR044938 [Display all genes with this domain]
PANTHER	32	1418	Enhancer of mRNA-decapping protein 4-like	PTHR15598	IPR045152 [Display all genes with this domain]
SMART	271	311	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE profiles	278	315	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	391	430	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE profiles	397	439	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	433	479	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	249	505	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	230	527	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

Show entries

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	1	12
MobiDBLite	1	200
MobiDBLite	33	46
MobiDBLite	58	74
MobiDBLite	75	93
MobiDBLite	174	186
MobiDBLite	628	637
MobiDBLite	628	778
MobiDBLite	649	662
MobiDBLite	676	692
MobiDBLite	698	708
MobiDBLite	718	731
MobiDBLite	735	757
MobiDBLite	911	982
MobiDBLite	914	923
MobiDBLite	956	977
Seg	5	19
Seg	33	46
Seg	50	95
Seg	98	124
Seg	133	146
Seg	166	178
Seg	181	194
Seg	649	662
Seg	676	692
Seg	738	752
Seg	956	977
Seg	1244	1259
Seg	1394	1405
Ncoils	998	1018

.

Personal Data