Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY28456

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Description

Lysine-specific demethylase 3B, putative isoform 2

Location

Chromosome 6: 25,400,112-25,406,657 reverse strand.

About this transcript

This transcript has 10 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene TCM_030013 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY28453	4142	1045aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GG95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY28456	4788	708aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GFV7	-
-	EOY28455	4532	1034aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GEZ0	-
-	EOY28452	4109	1034aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GH05	-
-	EOY28458	3740	897aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GG99	-
-	EOY28454	3694	1033aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GMV6	-
-	EOY28457	3069	1022aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GH10	-
-	EOY28459	2913	970aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GMW1	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	219	666	-	2.60.120.650	-
Superfamily	233	678	-	SSF51197	-
PANTHER	1	693	Histone demethylase JHDM2-like	PTHR12549	IPR045109 [Display all genes with this domain]
SMART	335	657	JmjC domain	SM00558	IPR003347 [Display all genes with this domain]
PROSITE profiles	354	657	JmjC domain	PS51184	IPR003347 [Display all genes with this domain]
Pfam	535	640	JmjC domain	PF02373	IPR003347 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	503	512
MobiDBLite	503	523
Seg	147	160
Seg	419	432
Seg	511	525
Alphafold	1	708

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