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    Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822) ▼

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    Transcript: EOY28358

    Description

    Transducin/WD40 repeat-like superfamily protein isoform 2

    Location

    Chromosome 6: 25,118,970-25,126,281 forward strand.

    About this transcript

    This transcript has 17 exons and is annotated with 46 domains and features.

    Gene

    This transcript is a product of gene TCM_029950 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    -EOY283554342966aa
     
    Protein coding
    		A0A061GEQ5 -Ensembl Canonical
    -EOY283605528742aa
     
    Protein coding
    		A0A061GER0 --
    -EOY283594037879aa
     
    Protein coding
    		A0A061GMM5 --
    -EOY283613526860aa
     
    Protein coding
    		A0A061GFK9 --
    -EOY283583522963aa
     
    Protein coding
    		A0A061GG13 --
    -EOY283572784927aa
     
    Protein coding
    		A0A061GGR9 --
    -EOY283562613870aa
     
    Protein coding
    		A0A061GFK5 --
    -EOY283622191730aa
     
    Protein coding
    		A0A061GGS4 --

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    PANTHER3603-PTHR19845-
    CDD8260-cd00200-
    PROSITE profiles5488-PS50294-
    PROSITE profiles96130-PS50294-
    PROSITE profiles138175-PS50294-
    PROSITE profiles180215-PS50294-
    Prints115129G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints157171G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints199213G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    HAMAP1954Katanin p80 WD40 repeat-containing subunit B1MF_03022IPR026962 [Display all genes with this domain]
    Pfam787914Katanin p80 subunit, C-terminalPF13925IPR028021 [Display all genes with this domain]
    SMART444WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam743WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles1153WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART4786WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam5086WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles5495WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART89128WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam92128WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles96137WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART131170WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam134170WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles138179WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART173212WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam174212WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles180221WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART215253WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam227252WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE patterns157171WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    PROSITE patterns199213WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    Superfamily6293WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
    Gene3D3169WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D170281WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite388434
    MobiDBLite391416
    MobiDBLite425434
    MobiDBLite489522
    MobiDBLite491518
    MobiDBLite544755
    MobiDBLite550561
    MobiDBLite578600
    MobiDBLite601614
    MobiDBLite676689
    MobiDBLite737755
    Seg601614
    Alphafold1963

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