Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY08497

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Description

RNA helicase family protein isoform 3

Location

Chromosome 5: 9,388,216-9,399,142 reverse strand.

About this transcript

This transcript has 16 exons and is annotated with 28 domains and features.

Gene

This transcript is a product of gene TCM_022976 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY08497	5508	1037aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EVP7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY08498	3378	1006aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EV06	-	-
-	EOY08499	2626	751aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061F1V5	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	226	983	-	PTHR18934	-
CDD	284	444	-	cd17917	-
CDD	523	670	-	cd18791	-
Gene3D	704	809	-	1.20.120.1080	-
Pfam	754	814	-	PF21010	-
Pfam	883	964	DEAD-box helicase, OB fold	PF07717	IPR011709 [Display all genes with this domain]
Pfam	273	429	DEAD/DEAH box helicase domain	PF00270	IPR011545 [Display all genes with this domain]
PROSITE patterns	387	396	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PS00690	IPR002464 [Display all genes with this domain]
Pfam	725	753	Helicase associated domain (HA2), winged-helix domain	PF04408	IPR048333 [Display all genes with this domain]
SMART	266	462	Helicase superfamily 1/2, ATP-binding domain	SM00487	IPR014001 [Display all genes with this domain]
PROSITE profiles	278	445	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
PROSITE profiles	528	702	Helicase, C-terminal	PS51194	IPR001650 [Display all genes with this domain]
Pfam	531	661	Helicase, C-terminal	PF00271	IPR001650 [Display all genes with this domain]
SMART	562	662	Helicase, C-terminal	SM00490	IPR001650 [Display all genes with this domain]
SMART	724	815	Helicase-associated domain	SM00847	IPR007502 [Display all genes with this domain]
Gene3D	221	446	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	265	838	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	508	682	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	48	81
MobiDBLite	175	204
MobiDBLite	175	231
Seg	26	39
Seg	49	79
Seg	197	208
Seg	326	338
Seg	404	420
Alphafold	1	1037
Ncoils	238	258

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