Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY07523

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Description

Ubiquitin ligase E3 alpha, putative isoform 1

Location

Chromosome 5: 1,842,957-1,857,599 forward strand.

About this transcript

This transcript has 17 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene TCM_021934 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY07522	8374	2054aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061ESZ0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY07523	8374	2054aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061ESZ0	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	117	186	-	cd19673	-
Gene3D	119	187	-	2.10.110.30	-
Pfam	871	956	-	PF22960	-
CDD	1420	1480	-	cd16482	-
Pfam	1566	2032	E3 ubiquitin-protein ligase UBR-like, C-terminal	PF18995	IPR044046 [Display all genes with this domain]
PANTHER	23	2044	E3 ubiquitin-protein ligase UBR1-like	PTHR21497	IPR039164 [Display all genes with this domain]
Superfamily	870	955	Winged helix DNA-binding domain superfamily	SSF46785	IPR036390 [Display all genes with this domain]
SMART	117	186	Zinc finger, UBR-type	SM00396	IPR003126 [Display all genes with this domain]
PROSITE profiles	117	187	Zinc finger, UBR-type	PS51157	IPR003126 [Display all genes with this domain]
Pfam	118	185	Zinc finger, UBR-type	PF02207	IPR003126 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1137	1157
MobiDBLite	1173	1207
MobiDBLite	1182	1201
MobiDBLite	1245	1275
MobiDBLite	1247	1275
Seg	164	172
Seg	293	303
Seg	573	586
Seg	608	623
Seg	698	710
Seg	1015	1026
Seg	1256	1275
Seg	1516	1526
Seg	1618	1632
Seg	1978	1987

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