Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY05320

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Description

LEUNIG_homolog isoform 3

Location

Chromosome 4: 28,067,943-28,075,754 reverse strand.

About this transcript

This transcript has 14 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene TCM_020345 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY05317	3757	777aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061ELS1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY05318	3685	530aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EKX6	-
-	EOY05319	3610	636aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061ESP4	-
-	EOY05320	3516	585aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EJW3	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	496	531	-	PS50294	-
PROSITE profiles	538	570	-	PS50294	-
PROSITE profiles	8	40	LIS1 homology motif	PS50896	IPR006594 [Display all genes with this domain]
SMART	8	40	LIS1 homology motif	SM00667	IPR006594 [Display all genes with this domain]
Pfam	10	36	LIS1 homology motif	PF08513	IPR006594 [Display all genes with this domain]
PANTHER	1	577	Transcriptional corepressor LEUNIG-like	PTHR44376	IPR044716 [Display all genes with this domain]
SMART	489	528	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	496	528	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	496	537	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	531	570	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	538	570	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	538	579	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	515	529	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	490	574	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	431	579	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	291	412
MobiDBLite	310	340
MobiDBLite	347	362
MobiDBLite	370	386
MobiDBLite	387	401
Seg	73	107
Seg	263	285
Seg	347	362
Seg	387	401
Alphafold	1	585
Ncoils	87	107

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