Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY04964

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Description

Ubiquitin-like superfamily protein, putative isoform 3

Location

Chromosome 4: 26,652,044-26,667,165 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene TCM_020101 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EOY04964	12091	551aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061ERL5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY04965	2305	536aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EJB9	-	-
-	EOY04966	2305	536aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EJB9	-	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	17	551	-	PTHR47770	-
Gene3D	25	135	-	3.40.30.10	-
Gene3D	319	403	-	3.10.20.90	-
Superfamily	21	133	Thioredoxin-like superfamily	SSF52833	IPR036249 [Display all genes with this domain]
SMART	319	402	UBX domain	SM00166	IPR001012 [Display all genes with this domain]
Pfam	325	401	UBX domain	PF00789	IPR001012 [Display all genes with this domain]
PROSITE profiles	329	400	UBX domain	PS50033	IPR001012 [Display all genes with this domain]
Superfamily	324	403	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	159	195
MobiDBLite	171	182
MobiDBLite	183	195
MobiDBLite	207	231
MobiDBLite	209	222
MobiDBLite	285	326
MobiDBLite	298	315
MobiDBLite	454	551
MobiDBLite	456	466
MobiDBLite	473	519
MobiDBLite	521	532
MobiDBLite	537	551
Seg	142	152
Seg	169	182
Seg	284	299
Seg	379	393
Seg	456	466
Alphafold	1	551

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