Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY03631

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Description

Pearli, putative isoform 2

Location

Chromosome 4: 17,457,366-17,467,329 reverse strand.

About this transcript

This transcript has 19 exons and is annotated with 20 domains and features.

Gene

This transcript is a product of gene TCM_018720 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY03628	6330	1823aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EG61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY03629	6567	1710aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EMS7	-
-	EOY03630	4812	1323aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EF60	-
-	EOY03631	4019	1339aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EFC9	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	739	784	-	cd15489	-
Gene3D	914	1312	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	877	1307	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
Pfam	936	977	HEAT repeat associated with sister chromatid cohesion protein	PF12765	IPR026003 [Display all genes with this domain]
PANTHER	92	1339	Scc2/Nipped-B family	PTHR21704	IPR033031 [Display all genes with this domain]
Superfamily	730	792	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	737	787	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	740	784	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	739	785	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
Gene3D	728	822	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	66	81
MobiDBLite	66	86
MobiDBLite	240	270
MobiDBLite	249	258
MobiDBLite	427	454
MobiDBLite	432	443
Seg	245	260
Seg	434	445
Seg	478	495
Seg	666	671

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