Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY03628

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Description

Pearli, putative isoform 2

Location

Chromosome 4: 17,454,016-17,467,485 reverse strand.

About this transcript

This transcript has 27 exons and is annotated with 28 domains and features.

Gene

This transcript is a product of gene TCM_018720 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY03628	6330	1823aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EG61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY03629	6567	1710aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EMS7	-
-	EOY03630	4812	1323aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EF60	-
-	EOY03631	4019	1339aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EFC9	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	671	716	-	cd15489	-
Gene3D	846	1585	Armadillo-like helical	1.25.10.10	IPR011989 [Display all genes with this domain]
Superfamily	311	956	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
Superfamily	837	1544	Armadillo-type fold	SSF48371	IPR016024 [Display all genes with this domain]
Pfam	868	909	HEAT repeat associated with sister chromatid cohesion protein	PF12765	IPR026003 [Display all genes with this domain]
PANTHER	22	1817	Scc2/Nipped-B family	PTHR21704	IPR033031 [Display all genes with this domain]
Pfam	1361	1559	Sister chromatid cohesion C-terminal domain	PF12830	IPR024986 [Display all genes with this domain]
Superfamily	662	724	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	669	719	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	672	716	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	671	717	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
Gene3D	660	754	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	173	202
MobiDBLite	181	190
MobiDBLite	359	386
MobiDBLite	364	375
MobiDBLite	1771	1781
MobiDBLite	1771	1823
MobiDBLite	1788	1798
MobiDBLite	1807	1823
Seg	177	192
Seg	366	377
Seg	410	427
Seg	598	603
Seg	1343	1356
Seg	1770	1781
Seg	1789	1798
Seg	1807	1820

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