Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY03024

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Description

Transducin/WD40 repeat-like superfamily protein isoform 2

Location

Chromosome 4: 3,700,689-3,705,600 reverse strand.

About this transcript

This transcript has 2 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene TCM_017435 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY03024	4596	346aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EL36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY03025	1041	346aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061EDG3	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	263	299	-	PS50294	-
PANTHER	12	346	WD repeat-containing protein DCAF7-like	PTHR19919	IPR045159 [Display all genes with this domain]
SMART	119	164	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	167	205	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	173	205	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	256	296	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	260	296	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	263	299	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	283	297	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	61	304	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	18	343	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
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Feature type	Start	End
Alphafold	1	346

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