Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: EOY24949

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Description

Ubiquitin ligase protein cop1, putative isoform 1

Location

Chromosome 3: 32,747,307-32,753,656 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene TCM_016403 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY24947	3312	1103aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G6X9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY24941	5362	1067aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G5T1	-
-	EOY24949	5046	834aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061GD20	-
-	EOY24943	4953	1067aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G5T1	-
-	EOY24942	4950	1082aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G6X3	-
-	EOY24945	4950	1066aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G508	-
-	EOY24946	4114	1083aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G5T7	-
-	EOY24948	3309	1102aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G6A2	-
-	EOY24944	3204	1067aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G5T1	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	296	611	-	1.10.510.10	-
PROSITE profiles	200	562	Protein kinase domain	PS50011	IPR000719 [Display all genes with this domain]
Superfamily	300	574	Protein kinase-like domain superfamily	SSF56112	IPR011009 [Display all genes with this domain]
PANTHER	6	829	WD-repeat protein SPA1/2/3/4	PTHR44218	IPR044630 [Display all genes with this domain]
Superfamily	754	829	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	726	830	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
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Feature type	Start	End
MobiDBLite	230	243
MobiDBLite	230	251
Seg	134	143
Seg	456	470
Seg	583	594
Alphafold	1	834
Ncoils	595	622

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