Theobroma cacao Matina 1-6 (Theobroma_cacao_20110822)
Description

Ubiquitin ligase protein cop1, putative isoform 1

Location
About this transcript

This transcript has 6 exons and is annotated with 35 domains and features.

Gene

This transcript is a product of gene TCM_016403 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-EOY2494733121103aa
 
Protein coding
A0A061G6X9 Ensembl Canonical
-EOY2494153621067aa
 
Protein coding
A0A061G5T1 -
-EOY249495046834aa
 
Protein coding
A0A061GD20 -
-EOY2494349531067aa
 
Protein coding
A0A061G5T1 -
-EOY2494249501082aa
 
Protein coding
A0A061G6X3 -
-EOY2494549501066aa
 
Protein coding
A0A061G508 -
-EOY2494641141083aa
 
Protein coding
A0A061G5T7 -
-EOY2494833091102aa
 
Protein coding
A0A061G6A2 -
-EOY2494432041067aa
 
Protein coding
A0A061G5T1 -

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Gene3D296611-1.10.510.10-
PROSITE profiles927960-PS50294-
Prints818832G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
Prints861875G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
Prints945959G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
PROSITE profiles200562Protein kinase domainPS50011IPR000719 [Display all genes with this domain]
Superfamily300573Protein kinase-like domain superfamilySSF56112IPR011009 [Display all genes with this domain]
PANTHER61102WD-repeat protein SPA1/2/3/4PTHR44218IPR044630 [Display all genes with this domain]
SMART742781WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART792831WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE profiles798840WD40 repeatPS50082IPR001680 [Display all genes with this domain]
Pfam803831WD40 repeatPF00400IPR001680 [Display all genes with this domain]
SMART834874WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam837874WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles841883WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART877916WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART920958WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam926958WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles927967WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART10521100WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE patterns818832WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
PROSITE patterns945959WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily7521098WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D726997WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
Gene3D10081102WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite230243
MobiDBLite230251
Phobius1995
Phobius9961018
Phobius10191102
Seg134143
Seg456470
Seg583594
Alphafold11102
Ncoils595622