Summary
- Splice variants
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- Gene history

Gene: TCM_012179

Description

Histone deacetylase 6 isoform 1

Location

Chromosome 3: 1,456,338-1,460,100 forward strand.

About this gene

This gene has 2 transcripts (splice variants), 203 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	EOY20838	2177	470aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061FUT7 A0AB32W5Q5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	EOY20839	1470	450aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061G1C3	-

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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SIFTAll
SIFT

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Consequences

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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(0)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(0)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(0)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(0)

5 prime UTR variant
(0)

3 prime UTR variant
(0)

non coding transcript exon variant
(0)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(50)

upstream gene variant
(0)

downstream gene variant
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LocationAll
Location

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3:1451338 - 3:1465100
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ClassAll
Class

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Not Somatic
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(50)
SNP
(0)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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SourceAll
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(50)
PRJEB28591
(0)
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Evidence

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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(50)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(0)
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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(50)
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AA coordAll
AA coord

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TranscriptAll
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EOY20838
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