Transcript: PGSC0003DMT400024304
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Description
U3 small nucleolar RNA (U3 snorna) associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG401009395]
Show/hide columns (1 hidden)
- PGSC0003DMT400024304 1847 452aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1AJV3 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical, - PGSC0003DMT400024303 1162 160aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1AJV2 - - PGSC0003DMT400024305 720 86aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1AJV4 -
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1 GAAAAAAATTCACTTATAGAAAAGGTCATCTCAACCCTAAACCCTCAACGGCTTGCCGAA 60
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61 GTTACACCTTGCTTCAAATTTCCCTTGCCGGAGTTCTTCTTCGTCTAAGTCTGTTGAAGA 120
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121 ACCACCACTCTCCCGCCGGCGCTAGTTTCTTACACTTTCATCCATCATCACCG ATATCAA 180
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181 T ATG AGG TTG AAA GTT ATA TCT CGG TCT ACG GAT GAT TTT ACT CGT GAA CGC AGT CAG GA 240
.ATGAGGTTGAAAGTTATATCTCGGTCTACGGATGATTTTACTCGTGAACGCAGTCAGGA 59
.-M--R--L--K--V--I--S--R--S--T--D--D--F--T--R--E--R--S--Q--D 20
241 C CTT CAG AGA GTT TTT CGG AAC TTC GAT CCC AGT CTT CGA CAT CAA GAG AAG GCA GTG GA 300
60 CCTTCAGAGAGTTTTTCGGAACTTCGATCCCAGTCTTCGACATCAAGAGAAGGCAGTGGA 119
20 --L--Q--R--V--F--R--N--F--D--P--S--L--R--H--Q--E--K--A--V--E 40
301 A TAT GTT CGT GCT CTG AAT GCA GTA AAA CTA GAC AAG ATA TTT GCA AGG CCA TTC GTT GG 360
120 ATATGTTCGTGCTCTGAATGCAGTAAAACTAGACAAGATATTTGCAAGGCCATTCGTTGG 179
40 --Y--V--R--A--L--N--A--V--K--L--D--K--I--F--A--R--P--F--V--G 60
361 A GCA ATG GAT GGG CAC ATT GAT GCT GTC TCT TGC ATG GCA AAG AAT CCT AAT CAC TTG AA 420
180 AGCAATGGATGGGCACATTGATGCTGTCTCTTGCATGGCAAAGAATCCTAATCACTTGAA 239
60 --A--M--D--G--H--I--D--A--V--S--C--M--A--K--N--P--N--H--L--K 80
421 A GGA ATA TTT TCT GGC TCC ATG GAC GGT G A T GTT CGC CTA TGG GAT TTA GCT ACC AG G CG 480
240 AGGAATATTTTCTGGCTCCATGGACGGTGATGTTCGCCTATGGGATTTAGCTACCAGGCG 299
80 --G--I--F--S--G--S--M--D--G--D--V--R--L--W--D--L--A--T--R--R 100
481 G ACA GTA CGT CAG TTT CCT GGT CAC CAA GGT GCA GTA CGT GGT TTG ACA GTG TCC ACG GA 540
300 GACAGTACGTCAGTTTCCTGGTCACCAAGGTGCAGTACGTGGTTTGACAGTGTCCACGGA 359
100 --T--V--R--Q--F--P--G--H--Q--G--A--V--R--G--L--T--V--S--T--D 120
541 T GGC CGT ATT CTT GTA TCA TGT GGA ACT GAT TGC AC T GTT AGG CTC TGG AAA GTT CCT GT 600
360 TGGCCGTATTCTTGTATCATGTGGAACTGATTGCACTGTTAGGCTCTGGAAAGTTCCTGT 419
120 --G--R--I--L--V--S--C--G--T--D--C--T--V--R--L--W--K--V--P--V 140
601 T GCT ACT CTA ATT GAG TCT GAT GAT GTA TCT GAT AAC TCA TCC CAG CCA TTG GCT GTT CA 660
420 TGCTACTCTAATTGAGTCTGATGATGTATCTGATAACTCATCCCAGCCATTGGCTGTTCA 479
140 --A--T--L--I--E--S--D--D--V--S--D--N--S--S--Q--P--L--A--V--H 160
661 T GTT TGG AAG AAT GCA TTC TG G GGT GTT GAC CAC CAA TGG GAT GGT GAT CTT TTT GCC AC 720
480 TGTTTGGAAGAATGCATTCTGGGGTGTTGACCACCAATGGGATGGTGATCTTTTTGCCAC 539
160 --V--W--K--N--A--F--W--G--V--D--H--Q--W--D--G--D--L--F--A--T 180
721 A GCT GGT GCT CAA GTT GAC ATT TGG AAC CAT AAC AG G TCT CAG CCG GTT AAT AGT TTT GA 780
540 AGCTGGTGCTCAAGTTGACATTTGGAACCATAACAGGTCTCAGCCGGTTAATAGTTTTGA 599
180 --A--G--A--Q--V--D--I--W--N--H--N--R--S--Q--P--V--N--S--F--E 200
781 A TGG GGG AAA GAC ACA GTT ACA TCT GTT CGG TTT AAT CCA GGG GAA CCT AAT CTT TTG GC 840
600 ATGGGGGAAAGACACAGTTACATCTGTTCGGTTTAATCCAGGGGAACCTAATCTTTTGGC 659
200 --W--G--K--D--T--V--T--S--V--R--F--N--P--G--E--P--N--L--L--A 220
841 T ACA TCA GCA AG T GAT CGA AGC ATA AGC ATC TAT GAT TTA CGG CTT TCT ACA CCA GCT AG 900
660 TACATCAGCAAGTGATCGAAGCATAAGCATCTATGATTTACGGCTTTCTACACCAGCTAG 719
220 --T--S--A--S--D--R--S--I--S--I--Y--D--L--R--L--S--T--P--A--R 240
901 A AAG GTT ATT ATG GCG ACA AAA ACT AAT TCT ATA GCA TGG AAT CCG ATG GAG CCA ATG AA 960
720 AAAGGTTATTATGGCGACAAAAACTAATTCTATAGCATGGAATCCGATGGAGCCAATGAA 779
240 --K--V--I--M--A--T--K--T--N--S--I--A--W--N--P--M--E--P--M--N 260
961 T TTT ACT GCC GCT AAT GAT GAT GGC AGA TGC TAC AGT TAT GAT GTT AGA AAG TTA AAT GA 1020
780 TTTTACTGCCGCTAATGATGATGGCAGATGCTACAGTTATGATGTTAGAAAGTTAAATGA 839
260 --F--T--A--A--N--D--D--G--R--C--Y--S--Y--D--V--R--K--L--N--E 280
1021 A GCC AAA TGT GTG CAT ATA GAT CAT ACC TCT TCA GT G ATG GAT ATA GAT TAT TCA CCA AC 1080
840 AGCCAAATGTGTGCATATAGATCATACCTCTTCAGTGATGGATATAGATTATTCACCAAC 899
280 --A--K--C--V--H--I--D--H--T--S--S--V--M--D--I--D--Y--S--P--T 300
1081 C GGT CGA GAA TTT GTT ACT GGA TCT TAT GAT AGA TCT G TG AGA ATT TTC AAA TAT AAT GG 1140
900 CGGTCGAGAATTTGTTACTGGATCTTATGATAGATCTGTGAGAATTTTCAAATATAATGG 959
300 --G--R--E--F--V--T--G--S--Y--D--R--S--V--R--I--F--K--Y--N--G 320
1141 T GGC CAC AGC AGG GAA ATT TAT CAC GCT AAG AGG ATG CAG AG G GTA TTC TGT GTC AAG TT 1200
960 TGGCCACAGCAGGGAAATTTATCACGCTAAGAGGATGCAGAGGGTATTCTGTGTCAAGTT 1019
320 --G--H--S--R--E--I--Y--H--A--K--R--M--Q--R--V--F--C--V--K--F 340
1201 C AGT TGC GAT GCA AGT TAT ATT ATC TCA GGA AGT GAT GAT ACC AAC CTA CGT CTA TGG AA 1260
1020 CAGTTGCGATGCAAGTTATATTATCTCAGGAAGTGATGATACCAACCTACGTCTATGGAA 1079
340 --S--C--D--A--S--Y--I--I--S--G--S--D--D--T--N--L--R--L--W--K 360
1261 A GCA AAA GCA TCT GAG CAA ATG GGA GTT G TT TTG CCA AGA GAG CGG AAA AGA CAT GAA TA 1320
1080 AGCAAAAGCATCTGAGCAAATGGGAGTTGTTTTGCCAAGAGAGCGGAAAAGACATGAATA 1139
360 --A--K--A--S--E--Q--M--G--V--V--L--P--R--E--R--K--R--H--E--Y 380
1321 T TTG GAG GCT GTC AAG AAT CGT TAC AAG CAT CTT CCT GAA GTC AGG CGC ATT GAC AG A CA 1380
1140 TTTGGAGGCTGTCAAGAATCGTTACAAGCATCTTCCTGAAGTCAGGCGCATTGACAGACA 1199
380 --L--E--A--V--K--N--R--Y--K--H--L--P--E--V--R--R--I--D--R--H 400
1381 C AGA CAC TTG CCA AAA CCA ATC TAC AAG GCA AGT AGA CAA ATA CGC GAG ATG ACA GAA TC 1440
1200 CAGACACTTGCCAAAACCAATCTACAAGGCAAGTAGACAAATACGCGAGATGACAGAATC 1259
400 --R--H--L--P--K--P--I--Y--K--A--S--R--Q--I--R--E--M--T--E--S 420
1441 T GCG AGG CGG AAA GAG GAG AGG AGG AAA GCT CAC AGT GCC CCT GGA AGC ATT AAG AAT AA 1500
1260 TGCGAGGCGGAAAGAGGAGAGGAGGAAAGCTCACAGTGCCCCTGGAAGCATTAAGAATAA 1319
420 --A--R--R--K--E--E--R--R--K--A--H--S--A--P--G--S--I--K--N--K 440
1501 G CAA CTG CGA ACA AAA AGA ATT GTC CGA GAA GTT GAA TGA AAAGTGTGGCTGTCTTGATC 1560
1320 GCAACTGCGAACAAAAAGAATTGTCCGAGAAGTTGAATGA.................... 1359
440 --Q--L--R--T--K--R--I--V--R--E--V--E--*-.................... 452
1561 TGCTGATGCATGTTAGCCAGGCCAATTTGAACCGTTTAGAAAGTTATTACCTATTTTCAC 1620
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1621 AGTTGTTAGCAGGCCTATAAGATAGTAATTTTATTTTATCAGAGGGAAGAATTGAAGTTC 1680
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1681 CATCATTTCATGTCGTTATCGAGATATAGTGGTGGTTACTTATGTTAAAATTATGTTGCT 1740
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1741 GCTTACTGCTAAAAATTTTGCCCTGCTCTTTCAAATAGTGATAAAAAAAAAATGCAGATT 1800
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1801 CTATCATTAAGAAAAACATGTTAACAGACTCTGGTTAAACTTTACAT 1847
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