Transcript: PGSC0003DMT400088988
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Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400038559]
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- PGSC0003DMT400088988 459 152aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1DH70 - A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"url":"/Solanum_tuberosum/Component/Transcript/Sequence_cDNA/sequence?g=PGSC0003DMG400038559;r=8%3A28443771-28445140;t=PGSC0003DMT400088988;db=core;time=1755000620868.868;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"background-color:#fff9af;color:#1044ee"],[32,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#fff9af"],[35,"fff"],[-28,"333333"],[5,"3;background-color:#fff9af"],[23,"fff"]]},"expect":["variants","variants"],"seq":[{"style":[7]},-6,{"style":[7,-38,0]},{"style":[9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8]},{"style":[9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2,-2,9,-2,2]},{"style":[4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8,-2,4,-2,8]},{"style":[9,-2,2,-2,9,-2,2,5,1,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1]},{"style":[6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5,-2,6,-2,5]},{"style":[3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1]},-1,{"style":[3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,1,-2,3,-2,7,0]},{"style":[7]},-6,{"style":[7,-38,0]},{"style":[7]},-6,{"style":[7,-38,0]}],"flourishes":{},"legend":{"other":{"utr":{"class":"cu","text":"UTR","config":"utr","default":"#ffdf33","label":null}},"_messages":[],"codons":{"c1":{"label":null,"default":"#fff9af","config":"c1","class":"c1","text":"Alternating codons"},"c0":{"label":null,"default":"#ffffff","config":"c0","class":"c0","text":"Alternating codons"}},"exons":{"exon0":{"default":null,"label":"#333333","text":"An exon","class":"e0","config":"exon0"},"exon1":{"label":"#1044ee","default":null,"config":"exon1","class":"e1","text":"Another exon"}}}}}
1 ATG CCG ACC GCG GCC GGC GAC GAC GGC GAC TTG AAG GAA GAG GTA ATT GAA TGG GAG ATG 60
1 ATGCCGACCGCGGCCGGCGACGACGGCGACTTGAAGGAAGAGGTAATTGAATGGGAGATG 60
1 -M--P--T--A--A--G--D--D--G--D--L--K--E--E--V--I--E--W--E--M- 20
61 AGG CCC GGC GGA ATG TTA GTT CAG AGA AGG AGT GAT AAT TCC GAC ATT CCA ATT GCT CAG 120
61 AGGCCCGGCGGAATGTTAGTTCAGAGAAGGAGTGATAATTCCGACATTCCAATTGCTCAG 120
21 -R--P--G--G--M--L--V--Q--R--R--S--D--N--S--D--I--P--I--A--Q- 40
121 AAT TTG CGG ATT CGT GTA GCT TAT GAT GCT GCA AGA TAT GAC ATC TCC ATT AAT CCT CAC 180
121 AATTTGCGGATTCGTGTAGCTTATGATGCTGCAAGATATGACATCTCCATTAATCCTCAC 180
41 -N--L--R--I--R--V--A--Y--D--A--A--R--Y--D--I--S--I--N--P--H- 60
181 GCC ACT TTT G G G GAA TTG AAG AAG GTA TTA AGA GAA GAA ATA GGG TTA GAA GCT GGA GAA 240
181 GCCACTTTTGGGGAATTGAAGAAGGTATTAAGAGAAGAAATAGGGTTAGAAGCTGGAGAA 240
61 -A--T--F--G--E--L--K--K--V--L--R--E--E--I--G--L--E--A--G--E- 80
241 CAA AGA ATA ATA TGG AGG GGA AAA GAA AGA GAG AAT GGA GAA TAT TTA GAC ATG TGT GGA 300
241 CAAAGAATAATATGGAGGGGAAAAGAAAGAGAGAATGGAGAATATTTAGACATGTGTGGA 300
81 -Q--R--I--I--W--R--G--K--E--R--E--N--G--E--Y--L--D--M--C--G- 100
301 GTG AAA GAT AGA TCA AAA GTA ATG CTA ATA GAA GAT CCA GCA AGC GAG GAG AAA AGA TTC 360
301 GTGAAAGATAGATCAAAAGTAATGCTAATAGAAGATCCAGCAAGCGAGGAGAAAAGATTC 360
101 -V--K--D--R--S--K--V--M--L--I--E--D--P--A--S--E--E--K--R--F- 120
361 ATA CAA ATG AGA AAG AAT GCC AAA ATC CAA GCA ACA TAT CAC TTC ATT AAC GAC GTT TCC 420
361 ATACAAATGAGAAAGAATGCCAAAATCCAAGCAACATATCACTTCATTAACGACGTTTCC 420
121 -I--Q--M--R--K--N--A--K--I--Q--A--T--Y--H--F--I--N--D--V--S- 140
421 ATC CAC ATT GAT AAA CTT GCT CAA CAG GTA CCA TCA TAA 459
421 ATCCACATTGATAAACTTGCTCAACAGGTACCATCATAA 459
141 -I--H--I--D--K--L--A--Q--Q--V--P--S--*- 152
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