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Solanum tuberosum (SolTub_3.0)
Description

Bromodomain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022422]

Location
About this transcript

This transcript has 3 exons and is annotated with 12 domains and features.

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
-PGSC0003DMT4000577582145492aa
 
Protein coding
M1C1L5 -Ensembl Canonical
-PGSC0003DMT4000577571655224aa
 
Protein coding
M1C1L4 --
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 GCTTTTTCTTGACTTCGTGTTTTCTATGCTTAAGTTTGCCTACCTTTAACCATACTCTAC     60
       ............................................................       
       ............................................................       

                                                                          
    61 GATATGCTAATTTGAGTCATCGACAAATAACTTCAATTGCAGGCCTGCAAAGCCAGGTAT    120
       ............................................................       
       ............................................................       

                                                                          
   121 GAGGAATTACGTAAGCGCTACTCTGGATGCACTGCTTTGTTTGAAGAGTTGCGGAAGCGA    180
       ............................................................       
       ............................................................       

                                                                          
   181 CGAGTGGAAGAATTGAAGCGGGAATTGGTGAGATCTGAGAGCTCCATTGGGTCTCTTGAG    240
       ............................................................       
       ............................................................       

                                                                          
   241 TCAAAGATTGAAAGGCTACAGGCTGAGAGAGAGCGATCTGATCAGATAGACCACGGTTTG    300
       ............................................................       
       ............................................................       

                                                                          
   301 AGTCACGCTGAATCTCCTGCTCCTCTGACAAAATCAGAAGATATTGAGTCTTCTGTGAAA    360
       ............................................................       
       ............................................................       

                                                                          
   361 GAAGAAGCAAAGGATGGGTTGTCTGCTGGCAGCTTCACACTTGATATTAGAACAGACGGG    420
       ............................................................       
       ............................................................       

                                                                          
   421 ACCCCTGAGTCTCAGGTTCCCACCATACCCTCAGCTACAGAGACAGTCGTGAAGCTAGAA    480
       ............................................................       
       ............................................................       

                                                                          
   481 CTTTCAGAGTCTTGGGGACGGGACAAAGCTCCAAGTACAAGCAAGGTTCCAGAGTCTGCC    540
       ............................................................       
       ............................................................       

                                                                          
   541 AATGGAAATGGTGGGGCTGTGAGGAAGAGAAGAGGTAAGAGGAGAAGAAAAGACACGGTT    600
       ............................................................       
       ............................................................       

                                                                          
   601 TGGGATGCCAAAGAAGGGAGCATTGAGGACAGTGACAATGTATGTTCAACGAGTCTCGCC    660
       ............................................................       
       ............................................................       

                                                                          
   661 TCCACTTCTCACTGTAAAGAAGTACTAACCAGTTGTGATCAGAGTATTAGGCGTTCTGCT    720
       ............................................................       
       ............................................................       

                                                                          
   721 GCAAGTGATCATATAGTAGGTATATCTAGGTTTAGGAACGATGACTTGATGAAGATTTTC    780
       ................................................ATGAAGATTTTC     12
       ................................................-M--K--I--F-      4

                                                                          
   781 AATTCTATTACACAGCATGAAGCTGCTATGGTCTTCAGGCATCGTCTTGATAGTCAGAAG    840
    13 AATTCTATTACACAGCATGAAGCTGCTATGGTCTTCAGGCATCGTCTTGATAGTCAGAAG     72
     5 -N--S--I--T--Q--H--E--A--A--M--V--F--R--H--R--L--D--S--Q--K-     24

                                                                          
   841 AGAGCAAGATACAAGAAAATGATAAGGCGTCATATGGATATCGAAACAGCAAGATCAAGA    900
    73 AGAGCAAGATACAAGAAAATGATAAGGCGTCATATGGATATCGAAACAGCAAGATCAAGA    132
    25 -R--A--R--Y--K--K--M--I--R--R--H--M--D--I--E--T--A--R--S--R-     44

                                                                          
   901 CTAGCCAACTGGTCCATCAAAACACCAGGTGAACTCTTCAGAGATTTCCTTTTACTAGCC    960
   133 CTAGCCAACTGGTCCATCAAAACACCAGGTGAACTCTTCAGAGATTTCCTTTTACTAGCC    192
    45 -L--A--N--W--S--I--K--T--P--G--E--L--F--R--D--F--L--L--L--A-     64

                                                                          
   961 AACAATGCCATGGTATTTTACTCGAAGAGAACGAGAGAATACAAAGCAGCAATGGCCCTA   1020
   193 AACAATGCCATGGTATTTTACTCGAAGAGAACGAGAGAATACAAAGCAGCAATGGCCCTA    252
    65 -N--N--A--M--V--F--Y--S--K--R--T--R--E--Y--K--A--A--M--A--L-     84

                                                                          
  1021 AGAGACATTGTCACTAGAGCCTATCGGGAACATTACAAAGGCTCTTACCACAAAGCTACA   1080
   253 AGAGACATTGTCACTAGAGCCTATCGGGAACATTACAAAGGCTCTTACCACAAAGCTACA    312
    85 -R--D--I--V--T--R--A--Y--R--E--H--Y--K--G--S--Y--H--K--A--T-    104

                                                                          
  1081 TCATCACACCTTCCATTGCCAATAATTGGTAATCCACCTGGGAAGCCACGAAGTGTTCGC   1140
   313 TCATCACACCTTCCATTGCCAATAATTGGTAATCCACCTGGGAAGCCACGAAGTGTTCGC    372
   105 -S--S--H--L--P--L--P--I--I--G--N--P--P--G--K--P--R--S--V--R-    124

                                                                          
  1141 CCTCGTCCTTCTAAAGACAAACTTCAAGCCAAGTATGGCAACAACATCACTGCTGGAACA   1200
   373 CCTCGTCCTTCTAAAGACAAACTTCAAGCCAAGTATGGCAACAACATCACTGCTGGAACA    432
   125 -P--R--P--S--K--D--K--L--Q--A--K--Y--G--N--N--I--T--A--G--T-    144

                                                                          
  1201 CTAGGAAGACAGAATCATAGACCTGGAGATGCTGCTGATTCTAAGGTACCATTGCAAACT   1260
   433 CTAGGAAGACAGAATCATAGACCTGGAGATGCTGCTGATTCTAAGGTACCATTGCAAACT    492
   145 -L--G--R--Q--N--H--R--P--G--D--A--A--D--S--K--V--P--L--Q--T-    164

                                                                          
  1261 CCCTTATCAGCTAAGAAGGGCTTCAAGAGGCCCGAAAAAATCAAGTGTGGATCGACTACC   1320
   493 CCCTTATCAGCTAAGAAGGGCTTCAAGAGGCCCGAAAAAATCAAGTGTGGATCGACTACC    552
   165 -P--L--S--A--K--K--G--F--K--R--P--E--K--I--K--C--G--S--T--T-    184

                                                                          
  1321 GAGACTGTCAATCCACAAACTAAAGTACAAGCTAAGGAATCATCACAACATAATATTAAG   1380
   553 GAGACTGTCAATCCACAAACTAAAGTACAAGCTAAGGAATCATCACAACATAATATTAAG    612
   185 -E--T--V--N--P--Q--T--K--V--Q--A--K--E--S--S--Q--H--N--I--K-    204

                                                                          
  1381 GTTAAAAAGGAGCATCGAGTTAAGGCTGTAACCAAAGAGAGGAAGAGGGCTCGGCAAAAG   1440
   613 GTTAAAAAGGAGCATCGAGTTAAGGCTGTAACCAAAGAGAGGAAGAGGGCTCGGCAAAAG    672
   205 -V--K--K--E--H--R--V--K--A--V--T--K--E--R--K--R--A--R--Q--K-    224

                                                                          
  1441 TAATTTGCTGATTCCATGATCCTTGGTGTTCACTTACTTTTTGGTATAGAAATTTTCCGT   1500
   673 TAA.........................................................    675
       -*-.........................................................    224

                                                                          
  1501 GTATCATAATTCAATTTTGTGTTGCCATTTTGCTCTAGGCTTCATCTTGATACAGGAGAA   1560
       ............................................................       
       ............................................................       

                                                                          
  1561 ATGCAGGTGTAATATAATACTAACCAAGTTGTGGATAATTAACTCCAAAATTATAGAATT   1620
       ............................................................       
       ............................................................       

                                                                          
  1621 GTTCCTGAACTATCTCTTCATCAGGCCCAACTATA                            1655
       ...................................                                
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