Transcript: PGSC0003DMT400034704
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Description
Ubiquitin ligase protein cop1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013334]
Show/hide columns (1 hidden)
- PGSC0003DMT400034706 2811 689aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1B157 - A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical, - PGSC0003DMT400034704 2896 380aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1B155 - - - PGSC0003DMT400034707 2811 689aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1B157 - - - PGSC0003DMT400034705 2808 688aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M1B156 - -
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{"provisional":{"legend":{"codons":{"c0":{"class":"c0","label":null,"text":"Alternating codons","config":"c0","default":"#ffffff"},"c1":{"default":"#fff9af","config":"c1","label":null,"class":"c1","text":"Alternating codons"}},"_messages":[],"other":{"utr":{"label":null,"class":"cu","text":"UTR","default":"#ffdf33","config":"utr"}},"exons":{"exon0":{"config":"exon0","default":null,"text":"An exon","class":"e0","label":"#333333"},"exon1":{"label":"#1044ee","class":"e1","text":"Another exon","default":null,"config":"exon1"}}},"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#1044ee"],[32,"333333"],[-12,"f9af;color:#1044ee"],[12,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#ffdf33"],[22,"f9af"],[1,"fff"]]},"expect":["variants","variants"],"seq":[{"style":[10]},-47,{"style":[10,-15,0]},{"style":[2]},{"style":[11]},{"style":[2]},{"style":[11]},-2,{"style":[2]},{"style":[11]},{"style":[2]},{"style":[11]},{"style":[2,-14,1]},{"style":[7,-32,2,11]},{"style":[11]},{"style":[2]},{"style":[11,-8,1]},{"style":[7]},{"style":[1]},-2,{"style":[7]},-1,{"style":[7,-15,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[5,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[9,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9]},{"style":[9,3,-2,9,-2,3,-2,9,-1,6,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13]},{"style":[6,4,-2,6,-2,4,-2,6,-2,4,-2,6,-1,9,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[9,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,4,12,-1,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6]},{"style":[6,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6]},{"style":[13,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13]},{"style":[13,4,-2,13,-2,4,-2,13,-2,3,8,-1,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5,-2,8,-2,5]},{"style":[9,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,13,-2,12,-2,13]},{"style":[6,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6]},{"style":[13,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[9,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9]},{"style":[9,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,4,12,-1,6,-2,12,-2,6,-2,12,-2,6,-2,12,-2,6]},{"style":[13,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13,-2,12,-2,13]},{"style":[13,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,13,-2,4,-2,5,9,-1,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9,-2,8,-2,9]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[9,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9,-2,3,-2,9]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,1]},{"style":[7]},-3,{"style":[1]},{"style":[7]},-1,{"style":[7,-15,10,0]},{"style":[10]},-47,{"style":[10,-15,0]},{"style":[10]},-47,{"style":[10,-15,0]}],"flourishes":{}},"url":"/Solanum_tuberosum/Component/Transcript/Sequence_cDNA/sequence?g=PGSC0003DMG400013334;r=11%3A793966-800249;t=PGSC0003DMT400034704;db=core;time=1748948931691.691;adorn=only"}
CACACTAACAAGTCTCTCCAGTTTTGAAAAACACCCGTTCCCCGCCAACGTGGTTCTTTT ............................................................ ............................................................ ATACCCTCACAAAAATACAACAAACAACAAAAAAAGAAATCACACATACAGTAATCATCT ............................................................ ............................................................ CTCCCATTCCAATTTCCTTTTCATCTTCTATACTATAAATATATATCATAACAACAATTA ............................................................ ............................................................ TGTAATCGACGCATTGTAACAGATCGATAGACTTGAACCTTGTTCGTACTTGACCTCCTG ............................................................ ............................................................ ATCAGTTCGATCGGGCGGAGTGTGATGGGAGGAGGAGGAGAGCGTAATTCAATGGGAGTA ............................................................ ............................................................ TTAGTGCCGACGGTGAACGCCGGTGAAACTTCAGCTCCGGCCGGAGCGGAGACGGAGGCG ............................................................ ............................................................ GCGGTGGTTGGGACGGAGGTGGTGGTGGTGACGGAGAGAGTTGCGGAGGAGGAAGAGGAA ............................................................ ............................................................ GAGGAAGAGGAGGTGGATAAGGATATACTGTGTCCGATATGTATGCAAATTATAAAGGAT ............................................................ ............................................................ GCGTTTCTAACGGCGTGTGGACATAGTTTTTGTTATATGTGCATTGTTACTCATTTGCAG ............................................................ ............................................................ AATAAAAGTGATTGTCCTTGTTGTTCTCATTACTTGACGACGAATCATCTTTATCCTAAT ............................................................ ............................................................ TTCCTTCTTAATAAG TTATTGATGAAGAAATCTGCTCGCCAAATGGCCAAAAGTGCTACA ............................................................ ............................................................ CCTGTGGAACAACTTCGCCAAGCAATACAGCAG G GATGCGAGGTGTCCGTTAAAGAGCTG ............................................................ ............................................................ GATAGTCTATTATCACTTCTTATGGACAAGAAAAGAAAAATGGAACAAGAAGAAGCTGAA ............................................................ ............................................................ ACAAATCTTCAGATTCTGCTCGAGTTTCTCCAGTGTTTAAAGAAGCAAAAAGTTGACGAG ............................................................ ............................................................ CTTAATGAG ATTCAAAATGATCTCCAATACATTAAAGAAGACATAAATGCTGTGGAGAAG ............................................................ ............................................................ CGTAGAATAGAGTTATATAGGACAAGAGGTAGATATTCTGCGAAAATGAGAACGCTAGTA ............................................................ ............................................................ GATGATTCATCTGCAATGACAGTCAGGCCTCCATTGAGAGATAAGGGAAGTGGTGCAATT ............................................................ ............................................................ GTTTCTAGTCCTGTCAATTTACAAGAACAAGGTCGTGCTGGCACTTCACAGACCAGGAAT ............................................................ ............................................................ ACTGATACAAGAGCTCCTCAGAATCCTCAAATTGTGCAACGGAAGGATGACAACCAAGGT ............................................................ ............................................................ GGATCAGATTCACAGGATCCTAATCAACCTGGAAAGTCATTAGCAAGGAAACGACGCGTT ............................................................ ............................................................ CATGCACAGGTTAATTCTGTAACTTACTGTTGTGCTTGTTGATGGTCGTGCTGATGTTCA ............................................................ ............................................................ TATGCCCTCTTTTAAC ATG TTC AAT TGT CAA CAG TTC AAT GAG CTT CAA GAT TGT TAC CT ................ATGTTCAATTGTCAACAGTTCAATGAGCTTCAAGATTGTTACCT ................-M--F--N--C--Q--Q--F--N--E--L--Q--D--C--Y--L A CAA AAG AGG CGC TAT TGG GCA AGA CAG TCG CAG AAA CAG GGA GAA AGG GTA GCA AAT AT ACAAAAGAGGCGCTATTGGGCAAGACAGTCGCAGAAACAGGGAGAAAGGGTAGCAAATAT --Q--K--R--R--Y--W--A--R--Q--S--Q--K--Q--G--E--R--V--A--N--I C ATG AAT AGA GTA GGT TAT TCT GCG GGA CTT GAG GAT TTT CAA TCT GTT CTG TCT ACC TT CATGAATAGAGTAGGTTATTCTGCGGGACTTGAGGATTTTCAATCTGTTCTGTCTACCTT --M--N--R--V--G--Y--S--A--G--L--E--D--F--Q--S--V--L--S--T--F T ACA CGA TAC AG T AGT CTG CGG GTT GTT GCT GAA CTC AGG CAT TCT GAC ATT TTC CAC TC TACACGATACAGTAGTCTGCGGGTTGTTGCTGAACTCAGGCATTCTGACATTTTCCACTC --T--R--Y--S--S--L--R--V--V--A--E--L--R--H--S--D--I--F--H--S A GCC AAT ATT GTT TCA AG T ATT GAA TTT GAC CGA GAT GAT GAA TTG TTT GCT ACT GCT GG AGCCAATATTGTTTCAAGTATTGAATTTGACCGAGATGATGAATTGTTTGCTACTGCTGG --A--N--I--V--S--S--I--E--F--D--R--D--D--E--L--F--A--T--A--G G GTA TCA CGA AGA ATT AAG GTC TTC GAG TTT TCA TCA G TG GTA AAC GAA CCA GCT GAT GC GGTATCACGAAGAATTAAGGTCTTCGAGTTTTCATCAGTGGTAAACGAACCAGCTGATGC --V--S--R--R--I--K--V--F--E--F--S--S--V--V--N--E--P--A--D--A G CAA TGT CCA ATT GTT GAA ATG TCT ACC CGA TCT AAA CTA AGT TGT TTG AGT TGG AAC AA GCAATGTCCAATTGTTGAAATGTCTACCCGATCTAAACTAAGTTGTTTGAGTTGGAACAA --Q--C--P--I--V--E--M--S--T--R--S--K--L--S--C--L--S--W--N--N C TAC ACT AAA AAC CAC TTA GCA AGC AGT GAC TAT GAG GGC ATA GTA ACG GTT TGG GAT GT CTACACTAAAAACCACTTAGCAAGCAGTGACTATGAGGGCATAGTAACGGTTTGGGATGT --Y--T--K--N--H--L--A--S--S--D--Y--E--G--I--V--T--V--W--D--V T ACA ACT CGT CAG A GT GTG ATG GAG TAC GAG GAG CAT GAA AAA CGA GCA TGG AGT GTT GA TACAACTCGTCAGAGTGTGATGGAGTACGAGGAGCATGAAAAACGAGCATGGAGTGTTGA --T--T--R--Q--S--V--M--E--Y--E--E--H--E--K--R--A--W--S--V--D C TTT TGT CGT ACT GAA CCT TCT ATG CTT GTA TCT GGT AGT GAT GAT TGC AAG GTT AAA GT CTTTTGTCGTACTGAACCTTCTATGCTTGTATCTGGTAGTGATGATTGCAAGGTTAAAGT --F--C--R--T--E--P--S--M--L--V--S--G--S--D--D--C--K--V--K--V T TGG TGC ACG AAT CAG GAA GCT AGT GTT CTT ACC ATT GAC ATG AAA GCT AAC ATT TGC TC TTGGTGCACGAATCAGGAAGCTAGTGTTCTTACCATTGACATGAAAGCTAACATTTGCTC --W--C--T--N--Q--E--A--S--V--L--T--I--D--M--K--A--N--I--C--S G GTG AAG TAT AAT CCT GGA TCC AGT GCT CAC ATA GCT GTG GGT TCT GCA GAT CAT CAC GT GGTGAAGTATAATCCTGGATCCAGTGCTCACATAGCTGTGGGTTCTGCAGATCATCACGT --V--K--Y--N--P--G--S--S--A--H--I--A--V--G--S--A--D--H--H--V T CAC TAT TAC GAC TTG AGA AAT ATT AGC CAG CCA CTG TAC ATT TTC AGT GGA CAC CGT AA TCACTATTACGACTTGAGAAATATTAGCCAGCCACTGTACATTTTCAGTGGACACCGTAA --H--Y--Y--D--L--R--N--I--S--Q--P--L--Y--I--F--S--G--H--R--K A GCT GTT TCA TAT GTA AAA TTT CTA TCA AAC TAT GAG CTA GCT TCT GCA TCA ACC GAT AG AGCTGTTTCATATGTAAAATTTCTATCAAACTATGAGCTAGCTTCTGCATCAACCGATAG --A--V--S--Y--V--K--F--L--S--N--Y--E--L--A--S--A--S--T--D--S T ACA CTA CGT TTG TGG GAT GTC AAT GAG AAC GTT CCA C TG CGT ACG TTT AAA GGA CAT AC TACACTACGTTTGTGGGATGTCAATGAGAACGTTCCACTGCGTACGTTTAAAGGACATAC --T--L--R--L--W--D--V--N--E--N--V--P--L--R--T--F--K--G--H--T A AAC GAG AAG AAC TTT GTT GGT CTT ACA GTA AAC AGT GAA TAC CTT GCA TGT GGA AGT GA AAACGAGAAGAACTTTGTTGGTCTTACAGTAAACAGTGAATACCTTGCATGTGGAAGTGA --N--E--K--N--F--V--G--L--T--V--N--S--E--Y--L--A--C--G--S--E G ACA AAT GAA GTC TTT GTC TAT CAC AAG G CA ATT TCT AAA CCA GCA GCT TGG CAC AGA TT GACAAATGAAGTCTTTGTCTATCACAAGGCAATTTCTAAACCAGCAGCTTGGCACAGATT --T--N--E--V--F--V--Y--H--K--A--I--S--K--P--A--A--W--H--R--F T GTT TCT GAT GAT CAG AAT GAT CCA GAC GGG GAC ATG GGA TCA TTT TTC ATC AGT GCT GT TGTTTCTGATGATCAGAATGATCCAGACGGGGACATGGGATCATTTTTCATCAGTGCTGT --V--S--D--D--Q--N--D--P--D--G--D--M--G--S--F--F--I--S--A--V T TGT TGG AAA CGG GAC AGC CCA ACG ATT GTT ACA GCA AAC AGT CAA GGG ACA ATA AAA GC TTGTTGGAAACGGGACAGCCCAACGATTGTTACAGCAAACAGTCAAGGGACAATAAAAGC --C--W--K--R--D--S--P--T--I--V--T--A--N--S--Q--G--T--I--K--A A CTT GTT CTT GCT GCT TGA TCATAACATTTGATTGATCAAACAATCAATCAAACACAAAT ACTTGTTCTTGCTGCTTGA......................................... --L--V--L--A--A--*-......................................... GATCGATAACGTTTGACTGATGAAGAGGCTTTATTGCAAAGGAAAAGAGGTATGAGTTCT ............................................................ ............................................................ CCATTGTACAGGAATGCTAACATTGGTTTTCGATTTTGGTGGTTCCTTATAACAAAGTCT ............................................................ ............................................................ GTTTGATGGGAACGCAGATGTAGCTTTTGACGTGTGATTACATAGTAGTAGAACAACTAC ............................................................ ............................................................ GCCTCAGTCCCAAACTGATTATATAGTAGTAGAAGTCACATAATTCTTATAGTTTGTGAA ............................................................ ............................................................ TCCTCTCTTTAATGGGGTTGTGTTTTATAGTTTATAGTATATAGAGATCAGGATAGTAGA ............................................................ ............................................................ GTGAAAGTTGTAGTGAAAACATGAATTTTACTTCTGTAAAAAAACTGTTTTGCCAGCTTT ............................................................ ............................................................ ACCATGTAAAGCATTATTTTCACACTTTCTATTCTTTTCAATTGTCAAAGGTCTTTTTAT ............................................................ ............................................................ TAGTCTCCATTTTCCA ................ ................ .
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