Transcript: PGSC0003DMT400003002
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Description
RING zinc finger protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001182]
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- PGSC0003DMT400003001 828 275aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M0ZL06 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical, - PGSC0003DMT400003003 1287 221aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M0ZL08 - - PGSC0003DMT400003002 1225 221aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
M0ZL08 -
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{"url":"/Solanum_tuberosum/Component/Transcript/Sequence_cDNA/sequence?g=PGSC0003DMG400001182;r=2%3A24675538-24677960;t=PGSC0003DMT400003002;db=core;time=1755003431587.587;adorn=only","provisional":{"legend":{"other":{"utr":{"config":"utr","text":"UTR","class":"cu","label":null,"default":"#ffdf33"}},"_messages":[],"codons":{"c1":{"config":"c1","class":"c1","text":"Alternating codons","label":null,"default":"#fff9af"},"c0":{"class":"c0","text":"Alternating codons","config":"c0","default":"#ffffff","label":null}},"exons":{"exon1":{"label":"#1044ee","default":null,"config":"exon1","class":"e1","text":"Another exon"},"exon0":{"config":"exon0","class":"e0","text":"An exon","default":null,"label":"#333333"}}},"expect":["variants","variants"],"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#1044ee"],[32,"333333"],[-12,"f9af;color:#1044ee"],[1,"fff;color:#1044ee"],[-21,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#ffdf33"]]},"flourishes":{},"seq":[{"style":[8]},-19,{"style":[8,-24,0]},{"style":[2,9]},{"style":[9]},{"style":[2]},-1,{"style":[2,-43,5]},{"style":[5,-26,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7]},{"style":[6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7]},{"style":[3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4]},{"style":[6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7,-2,3,-2,7]},{"style":[6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4,-2,3,-2,4]},{"style":[6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7,-2,6,-2,7]},-1,{"style":[6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4]},{"style":[6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,4,-2,6,-2,1]},{"style":[5]},{"style":[1]},{"style":[5]},{"style":[1,-24,8,0]},{"style":[8]},-19,{"style":[8,-24,0]},{"style":[8]},-19,{"style":[8,-24,0]}]}}
1 CCAACAGTTGTTGAGTTTTAAGTGGACTTGAGAATATTATGAGGCCCAAAAACAAGGAGA 60
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61 AGCTGAAGTTAGATCCGAAAGCCCCTGGAAGCTTCCTATGACAGTAATATCCTAAATTTT 120
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121 CTCCTTTGAATCGAAGATTTTGAATTCCAAAGTGTGTAGAAGGCCCTAGAATCTTCCATG 180
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181 GGGTCAATTATTTTTAACATATATTACCAGAAATCAGCAGAATGATTACAGTTTGAAGTC 240
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241 ATCATCATTCCTTCCCAATTTATCATTCTTCCTCCGCCAAATCTGTGAAGTGCATTTTTG 300
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301 TGTGCAAATTGTGACATTGAGTGAAATATGCAGAACTCAACTGCCACAACATTTGAGAGT 360
...........................ATGCAGAACTCAACTGCCACAACATTTGAGAGT 33
...........................-M--Q--N--S--T--A--T--T--F--E--S- 11
361 TCTTCGTCCTCAGGGAATGGCAGTAATGATGCTGGTGATTTTGAATGCAACATCTGCTTT 420
34 TCTTCGTCCTCAGGGAATGGCAGTAATGATGCTGGTGATTTTGAATGCAACATCTGCTTT 93
12 -S--S--S--S--G--N--G--S--N--D--A--G--D--F--E--C--N--I--C--F- 31
421 GAATTGGCACAAGATCCTATTGTGACCCTCTGTGGTCACCTCTACTGTTGGCCATGTCTG 480
94 GAATTGGCACAAGATCCTATTGTGACCCTCTGTGGTCACCTCTACTGTTGGCCATGTCTG 153
32 -E--L--A--Q--D--P--I--V--T--L--C--G--H--L--Y--C--W--P--C--L- 51
481 TATAGATGGCTAAGGCTTCATTCACAATCCCATGAGTGCCCTGTTTGTAAGGCTCTAATA 540
154 TATAGATGGCTAAGGCTTCATTCACAATCCCATGAGTGCCCTGTTTGTAAGGCTCTAATA 213
52 -Y--R--W--L--R--L--H--S--Q--S--H--E--C--P--V--C--K--A--L--I- 71
541 CAAGAGGAAAAGCTTGTTCCTCTTTATGGAAGAGGGAGGACTTCAACTGATCCCAGATCA 600
214 CAAGAGGAAAAGCTTGTTCCTCTTTATGGAAGAGGGAGGACTTCAACTGATCCCAGATCA 273
72 -Q--E--E--K--L--V--P--L--Y--G--R--G--R--T--S--T--D--P--R--S- 91
601 AAACCAGTACCTGGAGTTGAAATTCCTAGAAGGCCAGCAGGGCAAAGACCTGAAACGGCG 660
274 AAACCAGTACCTGGAGTTGAAATTCCTAGAAGGCCAGCAGGGCAAAGACCTGAAACGGCG 333
92 -K--P--V--P--G--V--E--I--P--R--R--P--A--G--Q--R--P--E--T--A- 111
661 CCTCCACCAGAATCGCATACTTTTCCTAATCCCGGGTTTGGTCTTATGGGAGGATTGTTT 720
334 CCTCCACCAGAATCGCATACTTTTCCTAATCCCGGGTTTGGTCTTATGGGAGGATTGTTT 393
112 -P--P--P--E--S--H--T--F--P--N--P--G--F--G--L--M--G--G--L--F- 131
721 CCAGGAGCAACTGCAAGTTTTGGTAACTTCACAATGTCTGCTGGTTTTGGTGGATTATTC 780
394 CCAGGAGCAACTGCAAGTTTTGGTAACTTCACAATGTCTGCTGGTTTTGGTGGATTATTC 453
132 -P--G--A--T--A--S--F--G--N--F--T--M--S--A--G--F--G--G--L--F- 151
781 CCATCATTGCTCAGTTTTCAGTTTAATGGATTCCAAGGTCCAGCTGCATTTGGTACAGCA 840
454 CCATCATTGCTCAGTTTTCAGTTTAATGGATTCCAAGGTCCAGCTGCATTTGGTACAGCA 513
152 -P--S--L--L--S--F--Q--F--N--G--F--Q--G--P--A--A--F--G--T--A- 171
841 CCAAATTACCCATTTGGGTATCCTCCTGCATATCATGGCGCGAATGTTCACAATGCTGCT 900
514 CCAAATTACCCATTTGGGTATCCTCCTGCATATCATGGCGCGAATGTTCACAATGCTGCT 573
172 -P--N--Y--P--F--G--Y--P--P--A--Y--H--G--A--N--V--H--N--A--A- 191
901 GCACAATCATCCCAAGGACAGGCAGATAATAATCTGAAGTTTATGTTCTTGCTTGTTGGA 960
574 GCACAATCATCCCAAGGACAGGCAGATAATAATCTGAAGTTTATGTTCTTGCTTGTTGGA 633
192 -A--Q--S--S--Q--G--Q--A--D--N--N--L--K--F--M--F--L--L--V--G- 211
961 TTTCTTGTATTCCTATATTTGTTTGGTTATTGAATGAACTTTCTCCTTTAGCTGTTGCCC 1020
634 TTTCTTGTATTCCTATATTTGTTTGGTTATTGA........................... 666
212 -F--L--V--F--L--Y--L--F--G--Y--*-........................... 221
1021 GAATACTGACTTGTAGTAATCATTCTTAATGGTTGTAAATATGTTGAATTTTTGCACTCT 1080
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1081 GAAGTTGCAACACAAAGATGAACTGATGTGATTAGTGGAATCTGCGTTGCAACACGAGAA 1140
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1141 TTGTGGTTCTTGATTGTTCATTAAAGTTGGTTTTTCCATTCCATGTTGGCTGAGAAAATG 1200
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1201 AGTTAAAATGGTGATTAGCGTGACA 1225
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